Detailed information of CsqKR_Scaf7_5.5 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf7_5.5SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2chr914715391471898-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR027248FamilySmall nuclear ribonucleoprotein Sm D2Interproscan
IPR047575DomainSm domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0008380Biological ProcessRNA splicingInterproscan
GO:0030532Cellular Componentsmall nuclear ribonucleoprotein complexInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf7_5.5 global RNA-seq network
TOP