Gene detail

Detailed information of CsqKR_Scaf77_4.2 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf77_4.2	SCAVENGER RECEPTOR CLASS F	chr10	369726	404768	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf77_4.2

ATGGATAAGACTCATTATTCATCAAACGTTGACGGTATTCTCGAAAATATTTCAGCCAGCGGAGACTTTTCTGAAAGTCGGGATGAACTTCGGGTTATCAACGGACATAAAAATCGTTTCCGGCATCGCTATAACCAAAATGGCGGACAATCGAATCGTTATGCAAATCGGTATAATAATCGTTACCCAAACGGTAACGGTTGGCATGGGCGGAACTCTTTTGTGCCCGATATAAGCGGCACCCCGTACCATAGGCCATACCCCACCCCTTGGCAGAGGCCTATATATAACAGCACCCCGCCCAAGGCAGATAGATTCCGGGTTCCAAAGCCGGTTCCCGCCCCAAAAGAACAAGAATCAGAAGACGAAAATACTAAAAATGATGCCCAACCATTTCGCGCGAAACCGCACGCGCGAAACAAGACACTTATAGCTTATATTGATGTCAAAGTGACTAGCCATGCTTCTTCGGGCTGCAGCGTCAACAACGGCGGCTTGGAGAATCCATGCAATCGAAGGAATGGCGGCTGTGAGCACGTGTGCACCCACGAGAAAGGGCGTATCCAGTGTCGGTGTTACAGCGGCTACACCCTCACTCGGGATGGAAGGTCGTGTAGAGATATAAACGAATGCCAGGTTAATAATGGCGGATGTTCGCAGGCTTGTGTCAACACCAATGGCTCGTTTGTTTGCACGTGCACACCAGGCTTTCAGCTGGGCGTTGACGGGCGTTCCTGCTACAGAATCGAAATGGAGGTCGTTGACAACTGTGCTGTCAACAATGGCGGATGTGCGCACAAGTGTCGTCATAGCCGCGGTGGCGCCATCTGTTCGTGTCGCAAGGGCTATAACCTGCAGGCAGACGGAAAATCATGTGAAGATATCGACGAATGTGCAAGTGGAGATAACTGCTGTACGCAGTCATGCAACAACAACCCTGGAGGGTACACGTGCGGGTGTGGACCAGGATTTTTACTCAACCGTGACGGCTGCGTTTGTGACGATAATGGAGGGTGTGAACAGGTTTGTGTCAACTCTGAGGGGTCATTCAGCTGTGCATGTCGACCTGGATTTAGACTGGCTAGAAATCGTCGACAGTGTCTTGACGACCGCGGTCCACAACGAGGCGACCTTCCGAAGATTCGTTACCAAACGACGCCACTTCCGATAATTCCCGAGGATAACGGACGTAATCTGCAACTAGCTCAAGAGCTACATGACACTGCTATTAAATACATATCGTCCAACTCTAATTATACGACAATTTCTGGATCAACTATTGACCAATCAGCGGCCATCGGCAATGTCAAAGGTGAACCAGCTTGCATACCTGGACACTTTGGCAAGGACTGCACGCTTACCTGCAGCAACTGCATGAATGCAGCAAGGTGCAACGAAAAACAAGATGGGTGCCAGTGTCTTCCTGGATGGAGAGGAATTACTTGCAACGAAACATGTCCAGCAGGCACGTATGGTCTTAATTGCAATGGTTTGTGCGCCTGTCAAAATGGTGGAACTTGCAATCACGTGAACGGTAAATGTGAATGTCCGCCTGGGGTCAAAGGTGAACATTGCGAAGATGGCTGCCCTCCCGGTTACTTTGGCAGACGATGCGACAAACCGTGTCCACAAAATGGACAGTGCAGATGTAAGCCTGGTTATCATGGCAAACGATGCGATTACCAGTGTCCAGAAGATCGCTATGGTTACGCTTGCAGCAAAAGGTGCAACTGTCCAGAGGGGACTAAGTGCAATCACGTGACTGGCTACTGTCTAAGGGACTGTCCAGCTGGATGGACAGGACACAGATGTGATGAACCCTGTCCTGTTGGCAAATATGGCAAATATTGCCTACTAGACTGTCAGTGTGGAAGCAGTGCTTGTGATCCCGAAACAGGCCTCTGTATGTGCCAGCCAGGCAGGATGGGTAAACACTGCTCAGAAACTTGCCCTGAAGGTAGCTGGGGTATAAACTGTAAAAGGAAGTGTAGTTGTCGTAATGGTGCGACATGCGATGCTGTTACAGGAGAGTGTATCTGTAATGCTGGCTGGTATGGTCCCCACTGCAGTGAAGCTTGCCCTCCTGGTCGTTATGGTGACCAGTGCATGAACAGGTGTATGTGTGAAAACAATGCGACATGCAACCCAGTTGGATGGCACTTGTACCTGTACAGAAGGCTGGACTGTGGGGCGTGTATCTGCAGCCCTGGGTGGCGAGGAATCCACTGCTCCAAAGCCTGCCCCGAAGGCTTTTTTGGCCTGGAATGTCAGAACACCTGTAACTGCCAGAATGGAGCTGTCTGCGACCACGTCACAGGGAAGTGTCAGTGTCCCCGAGGTCTGACCGGGGAGAGGTGTGAGAGGAAGTGTCCGGCAGGGACTCACGGACCTGACTGCATGGAGCAGTGCTTCTGTTTCAACAAGGGGGTGTGTGACCCCGTCACGGGAACCTGCATTTGTGCAGCGGGCTGGAAAGGAGCAAAGTGCAAAGAAGAATGTGCTCAAGGATATTATGGTCCAAACTGCAGCAAGTCATGTGACTGTGTACACAGCAAGTCATGTGACAGGTTTACCGGCCTGTGCAAATGTAAAGCTGGATATATTGGCTTGAAGTGCAACAAGACCTGTCCACCTCATCTCTATGGAGACGGCTGTGCACTGAGCTGTCAGTGTGAAAATGGAGCCCAGTGTGACCCGAGGTCAGGAGAGTGCACATGCACTCCGGGCTGGAGGGGGAAACACTGCAACAAACCCTGTCTACCTGGTCTCTATGGCAACAAATGTCAGGAAGAGTGCAACTGCAAAGCCAGTGAACCGTGCTATCATGTGACAGGGGAGTGTTCCTGTCCACCAGGCTACGAAGGTCGCGGTTGTGAGAAAAAATGCTCTCTGGGAACATTTGGTCCCCACTGTAGAGGAAAATGTGAATGTGCCCCTGGGTATATCTGCCATCATGTGACAGGGCAGTGTCAGTGTGGTCCAGACCTAAAGGGAAAGAACTGCAGCACAGGGTGTCAGTTCGGGTCGTACGGACCGAACTGCAGGAAGCTGTGTGAGTGTGACAACGATGGTGTCTGTGACACTGACACCGGGACGTGCACGTGTCCTCTCGGCTACATCGGCAGCACGTGCACCCAGCGCTGCCCAGAGGACCGGTTCGGAGAAAACTGCACCGGGATATTTTCTGTTTGTCTAGTTTGTCCTGAGAACACACACGGAGAGAACTGCACTGGAACCTGCAACTGCACCAACAACGGCTGGTGTGACCCACGCACCGGTCAATGCCGCTGTGACCTCGGCTACATGGGTCCCCAGTGTCAGTACACCTGTCCCCCGGGGCGGTTCGGACCAGGGTGTAACCACACCTGCACCTGTCACAACGAAGCATCATGTGACCCAGTTTCTGGATGCTGTTCTTGCACTGACGGCTTCTATGGACAGATGTGTGATTTGACTTGTCCAGAAGGTACCCACGGGTCATACTGCACTGAGAGGTGTGACTGTGTCAATGGCGCGACCTGCGACCCCAGGTCAGATGATAATGAAGATGAAGATGATGATGATGATGATCATGATGATGATGATGATGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAGGCTGAGTGTATATTAAGCAAGAGCAGATACGGGCCTAATTGTGAATATTTCTGTAACTGTGATAACGAAGGCAAATGTGATCCACAGACTGGGTCGTGCACGTGTTCAGAAGGCTGGATTGGTGCCAGGTGTCATGTAGCTGAAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGGAAATTTAA

Transcript

CsqKR_Scaf77_4.2

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR042635	Family	MEGF10/SREC1/2-like	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24043	SCAVENGER RECEPTOR CLASS F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005044	Molecular Function	scavenger receptor activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf77_4.2 global RNA-seq network