Gene detail

Detailed information of CsqKR_Scaf64_12.29 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf64_12.29	GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5	chr8	10961456	10968430	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf64_12.29

TAATAATTTAAATATGTCTTGTATTCGTATTATCTTTACGTTTGACTAATTTTATAATATTTAAATATGGCTAGCGTTGGGGATACATTTCAGCAGTTGCATGGAGCGGAAGATAATTTCCAGAAAGTAAATGGATCTTTAATTCCTTTCAATGGAAAACGAAGACTTGTTTGCGTAGAACATCCAGCAGTGGTTAAAAATCTTGATCGAGCCCTTTCCTCACTCGGAGGAACTAAAGAAATTACCAAGACATACAACCAGGAAACTAAGCGTCTGGAAATGAGATATCGACCAGATGATCCATACTGTAAACCTGCTTATGGAGATCGCTGTGCAACAACAAACTTACTGATGAAGGTGAAAAGAAGACGCAAATGTTTACCAGGTCGTCAGCCGAGGACTGATTGCTATGAATACAGCATTGAAATTCTAGGTGTCATTGATACAACCTACAGATTTCAAGCTATGGCTGACTTTCAGTATCTCCCAATGACAAAAAAAGAAAATGGATCTTATGAAAGTCTGTTGGATAAATTAATGCTGACATCATTTGTCAGAAAAGAAGAATTCTTAAAAAGGGATACTCCTCTTTTTCTTACTCCTCTTATTTTTTCAAGAATGGACATTCCTGGTGAATATGACTTTCGACCTGATCGAGGGTACACCTTGAAGAAAACAGAGCAGGAGTTGTGTATGCCTGACAATCAGCTTGGCATAGTTGCTCGTCACAGAAGATCTATTTATACAATATTTGTGAGTTACGATGATCCAACACCAACAGCACCAAAACCTGGAGCTGAGGAGTTTCTCATGGGTCGTTTTAACAAGAACACAGACTTGCTGGACACTGTCAGAAGGTTGTTTGATGAAAGGCCTGTCTGGTCAAAGAATGCTCTTCGATGTCACCTCAGCACCAAGCTGCAGTCACGCCTCAAGTTTGTCCTGCCTCTGCTTGCCTACTACATGACAACAGGACCGTGGAGGGCAATGTGGGTCCGACTGGGATACGACCCTCGGAAGGATCCTTCAGCCAAGAAATATCAGCTGTTAGACTTCCGTATCCGTCAAAGAGGTGGATGTGATCCTTTGCCTATAAAAGGTAAACGTGCAGTGTTCTCTCATCCAACACCTATGACAACAACAAGATACAGGCCTTCAGCTCCACAGATTCCTACACTGCAACACAAACAAGATCTCGAGAAAGAATACAAGGATAGTGTCTATATATTTGATCCTAACATCATGCCTCCGTACCGTCAGATGTTCTATCAGCTGTGTGACATACGTGAACCAAATATTGAGAAAATTGTTGCAGAAAATGAAGGACAGGAAACTGTTTGTACTGAGAAAGATGGCTGGTGTTCAAAGGATACAAACTACAAATGTCGACAGATTTTAGCCGAATGCATTGACAAATTGTGTAAAAAGAACTCATCTACAAGTGGATATGTTTTATCAAGTCATTATCAAACTCCAGAAAATGAGAAGACATTAGATGATATAGAGAGCAAATCGGATGATGAAATAGAACTGGACATAACAGCTGAAGAAGGTATCAATGACATGGAAACAGAAATGCTGGACTGCATCTGAGAGACAATTCTCCATTTTGCAGAGAGACGCATTACTGGTGCTTTTCCTATAAAAGAGGAAAATGAAAGATCAGTTCCAGCATGGAGGATAGATATTTTGGTGTTCAGTAAAAAGAAAAAAAAAAGATGTTGATGGAAAAGAAAAAAAATTAAGGTGTGGTAAATAAATGTTTGGGTATCATCAAAAATCTGATGAAACTTTGACTGGCAGAAAAGAAAAGTAAAGAAAAATCCAAAGGTGATGAAAGACTGTACATTGATGCAATTCCTGTTGGAAAAAAATATTTATTTATTAAAAAATTACACCCAGATGAACATAATTATAAATAGCTAAATTCATGTTTTTACAGTTTTCAAACTGATTTTAAATTTGTAACAGTGTACTTTTAAATGTACACAAGAAAAAAGCCTGGTTAAATTGGTTATTTTTAAAAATAAAATAACTTTTATTGATTTCAATCAGCTGCATAAAATCAGCATAAAAGTATATTTTATTTGCATCTTATTATCATAACACATTTTGTGTACATCCAGTGTTACTCTTCTTATTCTTAACAAACCAATCCTAATAATTACTATTTTTTTTAATGGAACCAGGCAATGCTAATAATTAATTATGAAAAGATAATTCCTGACAGATAACTGCATTTCAGGTAGTCATTCAAAATATCTTGTGTGTTGCCTCAGGGAATAAAGAAATAAAAAGTCTTCTTGGAAATTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09734	Tau95	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain	Family	Interproscan
PF17682	Tau95_N	Tau95 Triple barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019136	Domain	Transcription factor IIIC subunit 5, HTH domain	Interproscan
IPR040454	Family	Transcription factor IIIC subunit Tfc1/Sfc1	Interproscan
IPR041499	Domain	Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain	Interproscan
IPR042536	Homologous_superfamily	TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13230	GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000127	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0001002	Molecular Function	RNA polymerase III type 1 promoter sequence-specific DNA binding	Interproscan
GO:0001003	Molecular Function	RNA polymerase III type 2 promoter sequence-specific DNA binding	Interproscan
GO:0006384	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf64_12.29 global RNA-seq network