Gene detail

Detailed information of CsqKR_Scaf63_11.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf63_11.13	5'->3' EXORIBONUCLEASE	chr1	38994030	39015268	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf63_11.13

ATGCATCGATTGTGGTACATAGTGTTGAGGAAAAGCCCAAAAGAGGTTGATGGAGTAAGGATACCAGTCGACAGCAGCCAGCCCAATCCAAATGATACTGAGTTTGACAATTTGTATCTGGATATGAATGGAATTATCCATCCATGCTGCCATCCTGAAAACAAACCTCCTCCAAAGAATGAAGATGAGATGATGCTCTTGATATTTGAGTACATTGACAGAATCTTTTCCATTGTCCGACCAAGGAAACTTTTATACATGGCCATTGATGGTGTTGCACCAAGAGCCAAGATGAATCAACAGAGATCGAGAAGATTCAGAGCCTCAAAAGAGACCTATGAGAAAGGAGAAGAAATAACCAAGTTAAGGGAAGAGCTCAGTCTGAAAGGAATGGAGTTGCCTCCTCCTAAACCAGAAGAAGAGAAATTTGACAGCAACTGCATAACACCAGGTACCCCTTTCATGTTCCACCTGGCTGATTGTCTGAGGTTTTACATTCACGAACGACTCAACACTGATCCTGGCTGGGCTGGTATTAAAGTGATACTCTCAGATGCCAATGTACCAGGGGAAGGAGAACACAAAATCATGGATTACATCAGAAAACAGAGAGCACAACCTGACCATGATCCAAACACTCATCACTGTTTATGTGGAGCGGATGCTGACTTGATCATGCTTGGATTAGCAACACATGAGCCATACTTCACAATCATCAGAGAGGAATTCAAACCAAACCAGCCAAGACCTTGTGATTTGTGTGGACAGTTTGGTCATGAAATGAAAGACTGTTGTGGTTTACCTAAAGAAAAATGTGGAGAGTTTGATGAAATAAGTCAGCCAATTGGATCAGAAACAGACTTTATATTTATTCGGCTGAATATATTAAGAGAATATTTAGAGAAAGAGCTTTTTATGGAAGGATTGCCTTTTGAATATGATTTTGAGAGAGCACTTGATGACTGGGTCTTCATGTGTTTCTTTGTTGGTAATGATTTCCTACCTCATTTACCATCTCTTGAGATAAGAGAAGGTGCAATAGACAGACTGGTGAAGCTGTACAAACAGGTTGTTTACAAAACTGGAGGCTACATAAGTGATAGTGGAGTGGTCCATCTTGAAAGAGTTCAGCTTGTTTTAAAAGAACTAGGGGAAGTTGAAGATGATATATTCAAGAAAAGGAGAGACACAGAGCTTGATTTCAGAAGACGAGATAAAGATAAGAAGAAAAGGCTGAAAAGGGAGAAAAATGCCAACAGACCCCATTTTATGCCAGGAGGACAGTTTGCCCCACAGCCGATTGGACAAAACACTGGGCCTGTCAGCAATCCCCGAGAGGTGGCATACAACATGAGAATGCAGAGCAATGCCGCAGCGGCAGAGGCCCTCCGAGCTATGATGTCAAATGGTGGTGATTCTCAAGGCACCAAGCGAAAGCTGAATGATCTGGATGAGGACTCTGATGATGAACCTGAACCTGAGGATAATGTTAGGTTGTGGGAAGATGGATGGAAAGACCGGTACTACCAGTCAAAGTTTGATGTTGGCAATGAAGACATGGATTTTAGACACACTGTGGCTAATCACTATGTGAGAGGATTATGCTGGGTTCTCAGGTATTATTACCAGGGCTGTGCCTCATGGAAATGGTACTTTCCATACCACTATGCTCCTTTTGCATCAGATTTTGTAAATATAGGGGAACTAGACAATGACTTTGAAAGAAATACAGAGCCTTTCAAACCTTTAGAACAGCTCATGGGTGTTTTCCCAGCTGCCAGTAAGAAGCACTTACCAATAACATGGCAGAGACTCATGGATGATCCAGAATCTCCCATCATTGATTTCTATCCAATAGATTTCAGAGTTGATCTCAATGGCAAAAAGTATGCTTGGCAGGGTGTAGCATTGCTGCCTTTTGTGGATGAAAAGAGACTGTGGGCAGCCTTGAAGTCTGTTTACGAAGATCTTACACCTGCAGAGAGAAAGAGAAACACTCGTGGAAATGATCGCTTGTTTGTTGGATTCAAACACCCAGCTCACGACTACTTGGAAGCTCTGTATGAAGGAGATGGAACTCACGAACCTGTGGAGATTGATGCTAAACTAACTCAGGGGATGCGGGGTACTGTATGGTGTGATGAATATGCAGTTCTTCGTGGAGGCTCTATGCCATCACCTATTCCAGGATTAGAGGAGTTGAAAGACAACAGAACCATAAGTGTTCTGTTCCGAGATCCTCAGTATGAGGTTGGTTATTTGTTTCCTGCCAAAATTTTGCCAGGTGCAAAAATGCCACCCCCCGTTTTGAAGCCACAAGATTTTGAACAGATGAGACGAAGTGGACAGGGAGGTTATCGAGGGAGGGGTAGGGGACAAGGGAACTCAGGCTATGGTGGTGGTGGCAATCGTGATTACTACCGACCCCAGCTGGGTTTTCAGCCTCACAGTGGGTACAGGGAAAAGGATATTTCCACAGCCATCCGAATGATCAGACACGGTGTCAACACACCCACTGATCAGAGTTATGTGATGTCATCACAGAGCATGTATCCATCACAAGGCTATGGCAGAGACTATCAAGCTCGAGGTGGTTATGGACAGAGATCGGAGGGATACAGTGGTGGAAGAGGTGGAGGGAGCTATGACATGTATGGTGGCAGAGGTGGAAGGGGAGGCAGCCGTGGAGGTGGGCGTGGCAGTGGCTATGGAGGCAGCAGCTATGACAGTGGTGGTTACGGTGGGAGACAGCCCAGGCAGGAATATCACTCACAGGGGGGTTATGGCCAGCCAAGCAGCAGCAGCAGCTCAAGCAGCTACCACTGGAACAGAGGAGGTGGTAGTGGTGGTTTCAGAGAGAGCCGATATTCTGCCAATACAAACGATGGTGGCACCTACATGGGCTATGAAAGCTATTCATCAGCAAGTTATTCTACACAGAATGCACCTGGTGCTTATGAACAAGGCACACAACAAGAAAGATTTCGACCTCTTCCTGGGCAGCGACCAGATCGAAGTCAAAGTGGTCAGTGGAGATAG

Transcript

CsqKR_Scaf63_11.13

GGTATATCAGTTCTCATGCTGGCCATGTTGAAAATCTTCGAACTTGTTCACGTAAAATCTGTATGAGTTTTAACAATGGGTGTTCCAGCCTTTTTCAGATGGTTAAGTCGCAAATATGCATCGATTGTGGTACATAGTGTTGAGGAAAAGCCCAAAAGAGGTTGATGGAGTAAGGATACCAGTCGACAGCAGCCAGCCCAATCCAAATGATACTGAGTTTGACAATTTGTATCTGGATATGAATGGAATTATCCATCCATGCTGCCATCCTGAAAACAAACCTCCTCCAAAGAATGAAGATGAGATGATGCTCTTGATATTTGAGTACATTGACAGAATCTTTTCCATTGTCCGACCAAGGAAACTTTTATACATGGCCATTGATGGTGTTGCACCAAGAGCCAAGATGAATCAACAGAGATCGAGAAGATTCAGAGCCTCAAAAGAGACCTATGAGAAAGGAGAAGAAATAACCAAGTTAAGGGAAGAGCTCAGTCTGAAAGGAATGGAGTTGCCTCCTCCTAAACCAGAAGAAGAGAAATTTGACAGCAACTGCATAACACCAGGTACCCCTTTCATGTTCCACCTGGCTGATTGTCTGAGGTTTTACATTCACGAACGACTCAACACTGATCCTGGCTGGGCTGGTATTAAAGTGATACTCTCAGATGCCAATGTACCAGGGGAAGGAGAACACAAAATCATGGATTACATCAGAAAACAGAGAGCACAACCTGACCATGATCCAAACACTCATCACTGTTTATGTGGAGCGGATGCTGACTTGATCATGCTTGGATTAGCAACACATGAGCCATACTTCACAATCATCAGAGAGGAATTCAAACCAAACCAGCCAAGACCTTGTGATTTGTGTGGACAGTTTGGTCATGAAATGAAAGACTGTTGTGGTTTACCTAAAGAAAAATGTGGAGAGTTTGATGAAATAAGTCAGCCAATTGGATCAGAAACAGACTTTATATTTATTCGGCTGAATATATTAAGAGAATATTTAGAGAAAGAGCTTTTTATGGAAGGATTGCCTTTTGAATATGATTTTGAGAGAGCACTTGATGACTGGGTCTTCATGTGTTTCTTTGTTGGTAATGATTTCCTACCTCATTTACCATCTCTTGAGATAAGAGAAGGTGCAATAGACAGACTGGTGAAGCTGTACAAACAGGTTGTTTACAAAACTGGAGGCTACATAAGTGATAGTGGAGTGGTCCATCTTGAAAGAGTTCAGCTTGTTTTAAAAGAACTAGGGGAAGTTGAAGATGATATATTCAAGAAAAGGAGAGACACAGAGCTTGATTTCAGAAGACGAGATAAAGATAAGAAGAAAAGGCTGAAAAGGGAGAAAAATGCCAACAGACCCCATTTTATGCCAGGAGGACAGTTTGCCCCACAGCCGATTGGACAAAACACTGGGCCTGTCAGCAATCCCCGAGAGGTGGCATACAACATGAGAATGCAGAGCAATGCCGCAGCGGCAGAGGCCCTCCGAGCTATGATGTCAAATGGTGGTGATTCTCAAGGCACCAAGCGAAAGCTGAATGATCTGGATGAGGACTCTGATGATGAACCTGAACCTGAGGATAATGTTAGGTTGTGGGAAGATGGATGGAAAGACCGGTACTACCAGTCAAAGTTTGATGTTGGCAATGAAGACATGGATTTTAGACACACTGTGGCTAATCACTATGTGAGAGGATTATGCTGGGTTCTCAGGTATTATTACCAGGGCTGTGCCTCATGGAAATGGTACTTTCCATACCACTATGCTCCTTTTGCATCAGATTTTGTAAATATAGGGGAACTAGACAATGACTTTGAAAGAAATACAGAGCCTTTCAAACCTTTAGAACAGCTCATGGGTGTTTTCCCAGCTGCCAGTAAGAAGCACTTACCAATAACATGGCAGAGACTCATGGATGATCCAGAATCTCCCATCATTGATTTCTATCCAATAGATTTCAGAGTTGATCTCAATGGCAAAAAGTATGCTTGGCAGGGTGTAGCATTGCTGCCTTTTGTGGATGAAAAGAGACTGTGGGCAGCCTTGAAGTCTGTTTACGAAGATCTTACACCTGCAGAGAGAAAGAGAAACACTCGTGGAAATGATCGCTTGTTTGTTGGATTCAAACACCCAGCTCACGACTACTTGGAAGCTCTGTATGAAGGAGATGGAACTCACGAACCTGTGGAGATTGATGCTAAACTAACTCAGGGGATGCGGGGTACTGTATGGTGTGATGAATATGCAGTTCTTCGTGGAGGCTCTATGCCATCACCTATTCCAGGATTAGAGGAGTTGAAAGACAACAGAACCATAAGTGTTCTGTTCCGAGATCCTCAGTATGAGGTTGGTTATTTGTTTCCTGCCAAAATTTTGCCAGGTGCAAAAATGCCACCCCCCGTTTTGAAGCCACAAGATTTTGAACAGATGAGACGAAGTGGACAGGGAGGTTATCGAGGGAGGGGTAGGGGACAAGGGAACTCAGGCTATGGTGGTGGTGGCAATCGTGATTACTACCGACCCCAGCTGGGTTTTCAGCCTCACAGTGGGTACAGGGAAAAGGATATTTCCACAGCCATCCGAATGATCAGACACGGTGTCAACACACCCACTGATCAGAGTTATGTGATGTCATCACAGAGCATGTATCCATCACAAGGCTATGGCAGAGACTATCAAGCTCGAGGTGGTTATGGACAGAGATCGGAGGGATACAGTGGTGGAAGAGGTGGAGGGAGCTATGACATGTATGGTGGCAGAGGTGGAAGGGGAGGCAGCCGTGGAGGTGGGCGTGGCAGTGGCTATGGAGGCAGCAGCTATGACAGTGGTGGTTACGGTGGGAGACAGCCCAGGCAGGAATATCACTCACAGGGGGGTTATGGCCAGCCAAGCAGCAGCAGCAGCTCAAGCAGCTACCACTGGAACAGAGGAGGTGGTAGTGGTGGTTTCAGAGAGAGCCGATATTCTGCCAATACAAACGATGGTGGCACCTACATGGGCTATGAAAGCTATTCATCAGCAAGTTATTCTACACAGAATGCACCTGGTGCTTATGAACAAGGCACACAACAAGAAAGATTTCGACCTCTTCCTGGGCAGCGACCAGATCGAAGTCAAAGTGGTCAGTGGAGATAGAAGTTTTATTTGTTTGTTGATAAACGTGAACAGGGCTGAAGTATGCAACTCTCAGATATAGTTTAGCAGAAAACTGTACCTGGAGATAGTAGTATGGTGTATATATAATAGATAACTGAAGTATTGTATTGGAACTGTTCATGTCAGTGTGATGTTATACTGAGAGCACTGAAAATATTTAATGTGTGATTTTTACAAATATGTTTATTGACCTGTGAGAGAAATTTCTCTTAATATTAACAGTGACATGTGATTAACTGAGATTTAAGGGCTGTTTGAAATCGTTTATAAAATAAAGGTTAAAAAAATAAAAAATAAAAAAAATATATATATGTATATGTAATTTAAAAAAACAAACAAAAAAAATAAAACATAATTATCTTGTTATTTTATTACACAACATGGAATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03159	XRN_N	XRN 5'-3' exonuclease N-terminus	Family	Interproscan
PF17846	XRN_M	Xrn1 helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR004859	Domain	Xrn1, N-terminal	Interproscan
IPR017151	Family	5'-3' exoribonuclease type 2	Interproscan
IPR027073	Family	5'-3' exoribonuclease	Interproscan
IPR041412	Domain	Xrn1, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12341	5'->3' EXORIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004527	Molecular Function	exonuclease activity	Interproscan
GO:0004534	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf63_11.13 global RNA-seq network