Gene detail

Detailed information of CsqKR_Scaf55_35.25 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf55_35.25	UNCHARACTERIZED	chr1	21316694	21334904	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf55_35.25

ATGAGAAAGTTGATGAGACTGCTAGAACAGCACACATTCCGTAAAGAGATGATCACATCCTACTTCTGGCCAATAGCAACAGCTTTTATTCTTGATCCTATCTATGCCAAGTTGTCAGTCCTCCACGATGCTGCTGTCCCACTGCTGGGGGTACTCTGCAGACTGTTGCCATGGCATTTGTACTCAAATCAGCTCAAGTTTTTCCTTAGTTTGCTGCCAAAGAGAATTGAAAGTCAAAAGTTACTTGTCAGAGTGATTGTGTCAGTACTGGATGCATTTCACTTTGATCTGTCTCACAGTGAGTACAGAGTGAGCAAGGCCCCAGCTGTGGTAGAGGAGGAGACAACTAAAACATCAGATGAGACAGAAGCTGTCCAGGATTCTGAGATACCCACTGATATTCCGTTGTTAGACTCAACACAAGAAGATAAAACTGAGATGGAGATTAATGAAGGGGAAATGTCAGAAAACAAACAGGAAACAGAAAATTCCTCTCCTGCGATTCATCAGAAACTGGTGTGTTCCAGTAACCTAGCAACCAAAATCCACACCCACATCCTTCATATGCTTATTCCCCAGCTTCACAAAGTTCTTAGCCAGAAGGCTCGCAGTGACAGTGAACACAAGGCTGTAAAATCAAAGTATGCTGAAGATGATGAGATTCTCAGAGTCCCTCTTGCTCTGGCCATGGTCAAACTTCTCCAGAATCTACCACAGGGTTCACTGGAGAGAAGCCTTCCAGGTATTCTGTTAAAAGTGTGTCACTTTCTGAAATCACGATCCAAAGACATTCGACAGACAGCAAGAGACACACTGCTGAAAATGAGTCTCACCCTGGGTCCCCGGTATCTGCCCTACATCCTCGCTGAGATGAAGGGCATACTCAGGAGAGGGTATCAGGTGCATGTTTTGGGTTTCACAGTTAACCATCTGTTAAAACATATGTCTCCTATTCTGAAAGCTGGAGATCTCGATTCAGCTCTCAACAACCTCACAGAGATTTTCAATGAGGAATTGTTTGGTACAGCAGCAGAAGAGAAAGACGTCCAAGAAATTGCAGCAAAAACATTTGAAGCTAGAACAACAAAGAGTTACGATTCATATGAGATTGTCGCAAAATTCATTGGTCATGGATCATTAATGAGACTCATAAAACCATTGAAAGATATATTGGAGGGAACACACAGTCACAAAATAGCTGTCAAAGTTCAGGACATATTTAGAAATATTTCACATGGACTGATGGAAAACAAGTCAATACCGATAGAGACACTGATGCTTTTTATTCACACTCTGACATTTGACACAGCCAACATACTACAAGAATCCTCCAAAGAAAACAACACAAAGAAGGTAAGAGAGGATTGCAGACTGCAACCTCCTAACTGTCTTCTGCTGGAAACTCGGCTTCCACGTGGAGGAGAGAAACCAAAAACAGCAAAGAAAACAAACATCCATGTTATTGTCGAGTTTGGACTTAAGCTTCTTCATCTGTGTTTAAAAAGATCTTACCTGGTTGCCCGTGACAACAGTCATTTACAGCTTCTTGATCCAATGATTGGTCCACTGGCCGAGTGTCTGGAGTCAAAACATATCAAGATCAATACTTTCAGTATGCGTTGTTTGTTGTGGCTACTCAAGTTTCCTCTTCCTGCGCTCAAGAAAAACATTGACAAAATAGCAAATGGCTTGTTCGTCTTACTGAAAAACTATGCATCTGCTGGAGCAGCGAAGGGAGACAACTTGGAACTGGTTTTCACTTGTTTTAAGTGTGTGACAGTGTTGGTAAAAGATGTAAAATTCTACAAAATCAACTCAGAAAAGCTGCAGGTTTTGTTGTGTTTCTGTGAGGAGGATCTGCATGACTACTCCAGACAAAGCTCTGCTTTCATACTACTCAAGGCCATATTGTCAAGGAAACTGGATGTGCCAGAACTTCACAGTTTGATGGACAAAGTGGAGAAGGAAGCTATAACAGCTGACAATGCTCACATGCGGTTACAGTGTCGACAGGTGATCCAGCAGTATTTACTAGACTACCCACTTGGAAAGATGTTAGTCAAACATCTCCAGTACTTTGTAGCTCAACTGTCGTACAGTATGGAGTCAGGACGGGAATCCACGCTCGAGATGATGGCCACCATGTTTTCTTCTTTCCCTGTCAATGTTTTAATACAACATGCTGGTATGTTCTTTGTTCCCATGGCAGTGGCGTTGATGAATGATAATTCTGTAAGATGTCGCAAACTCACAGCTCTTGCCATAAAGTTACTTCTTGAAAAGATAGATGTTCGTACCAGAGATAATCTGTTTAATATTACACTTGAGTGGTTTAAAGATAATAAAATACAACACAGAACATTAGCTATACAGTTGTGTGGCTTGTTTGTTGAAGTTGAAGCTGTCGGGTTTAATCATCGCCTTGACAACATCCTACCACTAATGCAACAACAGATTAACCCAAGTAGATTTGAAGATTTACAGTCAAAGAAAACTGAAACGGAACAGGTACTTGATCACTATCTGTACAACATTCTGAACACTCTGGCTAAAATACTACAGCAGTGTGACATCCTGACAAAACCAAAGTGGACAGAAGAACTCAATTTAATCTGGGAACATGTTCATTCTCATCTCTTGTATGCTCATGTCTGGGTTAGACTGGTTTCAGCTCAGTTGTTTGGTTTGTTGTTTGCATCCTGGAAACCAGAAGATTTGTGTGCAACATTAACAGAAAACCAGTCTACAGATAAAGTGCAGCAGTATTTACAGATTAATCTCATTGAAAAGATTAAACAGTTGATTTATGCCTTTGTCTCTCAGCTCCAGTCTCCTTTGTTGGATCAAGATCTAGCAGATCAGATTGTTAAGAACATGCTGTTCTTGGGTAGTATAGTCAAGTTACTGTGTGACAACAAGGACATTGACTTGAATGAGAAACCGACTGATGATGCAGAAACATCAGCAAAACAGCAGCTGTCAGTGAAATGGCTGGTGAGGAAGATGGTGCGTGAAGCCAACCATGAAGCTGTCATTTCTCCAAAGAAAAAAATTAAGAGAACTAGTGTTTTCAAGTGGCTGGCTGCATACAGTTTACAACTGGACAGTCAGTGTTTGGTGGACATTCTCCATGTCATCCTACCTCCTCTACAGAGAGAAATCACCAGACTCACTGAAGAGAACAGTTTAAAAACTTTAGCTCAGGAGGTCACAGACTTGTTGAAGAAACAGGTTGGGGTTGAGCAGTTTACTCAGGTTTTTGTCAGGGTGCAGCAAGTCAGATCCGTTAGAAAAGAAACCAGAAAGAGAACCCGAGCTATAGAGGCTGTGTCAAATCCAGAAATTGCAGCCAGGAAACGATTAAAGAAGAATCTTTCAAAGAAAGAAGCAAAGAAAAGGAAAATTGATCTGAAACGTCCATCAAAGAAAATTAAAAGAAGAAAACTTCTTGATATGGCTATTGTACAAGACAACTAA

Transcript

CsqKR_Scaf55_35.25

ATTAAATAAAATAAAAAATCATGTTGGAAAAAAACATATATTAATTAATTCGTATTTTTTTTTTCTTTTCTTTTCTTTTTTAATTTTTCTTAAATAATTTTTTTTTTTTTTTTTTTAAAAATTTTTTTTTTTTTATTTTTGATATATTTTTTTTTATTTATTTATTTTATTTTGTTCACCCAGGTATATCGCAGGGCTAGAGCAATGAGAAAGTTGATGAGACTGCTAGAACAGCACACATTCCGTAAAGAGATGATCACATCCTACTTCTGGCCAATAGCAACAGCTTTTATTCTTGATCCTATCTATGCCAAGTTGTCAGTCCTCCACGATGCTGCTGTCCCACTGCTGGGGGTACTCTGCAGACTGTTGCCATGGCATTTGTACTCAAATCAGCTCAAGTTTTTCCTTAGTTTGCTGCCAAAGAGAATTGAAAGTCAAAAGTTACTTGTCAGAGTGATTGTGTCAGTACTGGATGCATTTCACTTTGATCTGTCTCACAGTGAGTACAGAGTGAGCAAGGCCCCAGCTGTGGTAGAGGAGGAGACAACTAAAACATCAGATGAGACAGAAGCTGTCCAGGATTCTGAGATACCCACTGATATTCCGTTGTTAGACTCAACACAAGAAGATAAAACTGAGATGGAGATTAATGAAGGGGAAATGTCAGAAAACAAACAGGAAACAGAAAATTCCTCTCCTGCGATTCATCAGAAACTGGTGTGTTCCAGTAACCTAGCAACCAAAATCCACACCCACATCCTTCATATGCTTATTCCCCAGCTTCACAAAGTTCTTAGCCAGAAGGCTCGCAGTGACAGTGAACACAAGGCTGTAAAATCAAAGTATGCTGAAGATGATGAGATTCTCAGAGTCCCTCTTGCTCTGGCCATGGTCAAACTTCTCCAGAATCTACCACAGGGTTCACTGGAGAGAAGCCTTCCAGGTATTCTGTTAAAAGTGTGTCACTTTCTGAAATCACGATCCAAAGACATTCGACAGACAGCAAGAGACACACTGCTGAAAATGAGTCTCACCCTGGGTCCCCGGTATCTGCCCTACATCCTCGCTGAGATGAAGGGCATACTCAGGAGAGGGTATCAGGTGCATGTTTTGGGTTTCACAGTTAACCATCTGTTAAAACATATGTCTCCTATTCTGAAAGCTGGAGATCTCGATTCAGCTCTCAACAACCTCACAGAGATTTTCAATGAGGAATTGTTTGGTACAGCAGCAGAAGAGAAAGACGTCCAAGAAATTGCAGCAAAAACATTTGAAGCTAGAACAACAAAGAGTTACGATTCATATGAGATTGTCGCAAAATTCATTGGTCATGGATCATTAATGAGACTCATAAAACCATTGAAAGATATATTGGAGGGAACACACAGTCACAAAATAGCTGTCAAAGTTCAGGACATATTTAGAAATATTTCACATGGACTGATGGAAAACAAGTCAATACCGATAGAGACACTGATGCTTTTTATTCACACTCTGACATTTGACACAGCCAACATACTACAAGAATCCTCCAAAGAAAACAACACAAAGAAGGTAAGAGAGGATTGCAGACTGCAACCTCCTAACTGTCTTCTGCTGGAAACTCGGCTTCCACGTGGAGGAGAGAAACCAAAAACAGCAAAGAAAACAAACATCCATGTTATTGTCGAGTTTGGACTTAAGCTTCTTCATCTGTGTTTAAAAAGATCTTACCTGGTTGCCCGTGACAACAGTCATTTACAGCTTCTTGATCCAATGATTGGTCCACTGGCCGAGTGTCTGGAGTCAAAACATATCAAGATCAATACTTTCAGTATGCGTTGTTTGTTGTGGCTACTCAAGTTTCCTCTTCCTGCGCTCAAGAAAAACATTGACAAAATAGCAAATGGCTTGTTCGTCTTACTGAAAAACTATGCATCTGCTGGAGCAGCGAAGGGAGACAACTTGGAACTGGTTTTCACTTGTTTTAAGTGTGTGACAGTGTTGGTAAAAGATGTAAAATTCTACAAAATCAACTCAGAAAAGCTGCAGGTTTTGTTGTGTTTCTGTGAGGAGGATCTGCATGACTACTCCAGACAAAGCTCTGCTTTCATACTACTCAAGGCCATATTGTCAAGGAAACTGGATGTGCCAGAACTTCACAGTTTGATGGACAAAGTGGAGAAGGAAGCTATAACAGCTGACAATGCTCACATGCGGTTACAGTGTCGACAGGTGATCCAGCAGTATTTACTAGACTACCCACTTGGAAAGATGTTAGTCAAACATCTCCAGTACTTTGTAGCTCAACTGTCGTACAGTATGGAGTCAGGACGGGAATCCACGCTCGAGATGATGGCCACCATGTTTTCTTCTTTCCCTGTCAATGTTTTAATACAACATGCTGGTATGTTCTTTGTTCCCATGGCAGTGGCGTTGATGAATGATAATTCTGTAAGATGTCGCAAACTCACAGCTCTTGCCATAAAGTTACTTCTTGAAAAGATAGATGTTCGTACCAGAGATAATCTGTTTAATATTACACTTGAGTGGTTTAAAGATAATAAAATACAACACAGAACATTAGCTATACAGTTGTGTGGCTTGTTTGTTGAAGTTGAAGCTGTCGGGTTTAATCATCGCCTTGACAACATCCTACCACTAATGCAACAACAGATTAACCCAAGTAGATTTGAAGATTTACAGTCAAAGAAAACTGAAACGGAACAGGTACTTGATCACTATCTGTACAACATTCTGAACACTCTGGCTAAAATACTACAGCAGTGTGACATCCTGACAAAACCAAAGTGGACAGAAGAACTCAATTTAATCTGGGAACATGTTCATTCTCATCTCTTGTATGCTCATGTCTGGGTTAGACTGGTTTCAGCTCAGTTGTTTGGTTTGTTGTTTGCATCCTGGAAACCAGAAGATTTGTGTGCAACATTAACAGAAAACCAGTCTACAGATAAAGTGCAGCAGTATTTACAGATTAATCTCATTGAAAAGATTAAACAGTTGATTTATGCCTTTGTCTCTCAGCTCCAGTCTCCTTTGTTGGATCAAGATCTAGCAGATCAGATTGTTAAGAACATGCTGTTCTTGGGTAGTATAGTCAAGTTACTGTGTGACAACAAGGACATTGACTTGAATGAGAAACCGACTGATGATGCAGAAACATCAGCAAAACAGCAGCTGTCAGTGAAATGGCTGGTGAGGAAGATGGTGCGTGAAGCCAACCATGAAGCTGTCATTTCTCCAAAGAAAAAAATTAAGAGAACTAGTGTTTTCAAGTGGCTGGCTGCATACAGTTTACAACTGGACAGTCAGTGTTTGGTGGACATTCTCCATGTCATCCTACCTCCTCTACAGAGAGAAATCACCAGACTCACTGAAGAGAACAGTTTAAAAACTTTAGCTCAGGAGGTCACAGACTTGTTGAAGAAACAGGTTGGGGTTGAGCAGTTTACTCAGGTTTTTGTCAGGGTGCAGCAAGTCAGATCCGTTAGAAAAGAAACCAGAAAGAGAACCCGAGCTATAGAGGCTGTGTCAAATCCAGAAATTGCAGCCAGGAAACGATTAAAGAAGAATCTTTCAAAGAAAGAAGCAAAGAAAAGGAAAATTGATCTGAAACGTCCATCAAAGAAAATTAAAAGAAGAAAACTTCTTGATATGGCTATTGTACAAGACAACTAATGAAAGAATTTTTTTTTTTTTTTTTTGAAATTAAGAAACTGAGAAACATTTTAAAAATGAAAAATAATATTTTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20416	UTP20_C	U3 small nucleolar RNA-associated protein 20, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046523	Domain	U3 small nucleolar RNA-associated protein 20, C-terminal	Interproscan
IPR052575	Family	Small subunit processome component 20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17695	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf55_35.25 global RNA-seq network