Gene detail

Detailed information of CsqKR_Scaf53_2.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf53_2.10	TRANSCRIPTION INITIATION FACTOR TFIID	chr6	3222906	3236391	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf53_2.10

ATGTTTATTTTTGATGATGACCAGAAAAAAGAAGATGAAACTGAGAAGGAATCTCCAGACAGTGGTTTAGAATTTCCTGATGAAGCATTTCTCATGGTGACACAGATTCCGTGGGAAGATGACATAATCTGGAATGGTGAAGAGGTCAGACAGAAGATTCTTCAAGCTCATAAGACTAAGGCAGCGGTTGCAGGCTGGGTTCCCAGTACCAGTCACAGAACTGCCACCCAGTTCTTAAATCAAGGAAAACCTTGGTCCCACAATTTAATTCAGAAGAACATTCCTTCAACAGTGACCCAGTCCATGTCTGGCCCTAGTTCAGATGTATCAGAGTCAGGTAACACAAACAAGTGGTACTCCATTTTTCCTATTGAGAATGAAAGTTTAATATATGGAAAGTGGGAAGATGACATAATCTGGGATGCACAGAACATGGATCGTATACCCAGTCCTCCAATTCTGACCCTTGACCCCAATGATGACAACATCATTCTGGAAATCCCAGCTGATCGAGAGAAGAAAGAAGAGTCAGAACCTACAAAGAAAGAAAAGTCTGAGATAAAGAAATCCAAAATGGTGCTGAGCAAAGCTGGGATAATAAAAGATGATGAAGATGAGAAGGAAGAGGAGTGTGACACTATGCAACAAAAGGATCCATTTAATTTATCCAATGATGAATACTACAATCCAAAACTTCTGGATAACACTTTGAGATCAACTATAGGCAGCAGTCTTATTCAGCATTCCACTCCAGCAGTTGAGTTACGGCAGCCATTTTTCCCAACATACATGGGCCCTAATAAATTACGCTGCTTTCATCGAGCCTCTCTCAAGAGGTACTCCCATGGTCCTATGGCGTTACCTGGCTTTTATCCCGTTCTACCACTGCTCAAAACAATCAGACGGAAAGCTAAGATGAGAGAGCAGGAGAGGCAGGCTTATGGAGGTGGAGAGATGTTCTTTATGAGGCAGAACCAGGACCTGAGTGGAATGGATGGAGATCTCGTTCTGGCTGAATACTCAGAGGAGTTTCCTCCCTTGATCATGCAAGTTGGAATGGCTACAAAGATTAAGAATTATTACAAGAGGAAACCTGGTAAAGACTCCAACCCTCCTCAGTTTGAGTATGGAGAGTTGGCCTACGCCCACACTTCGCCTTTTCTTGGTGCGCTGAGGCCTGGGTGCTGTCAGCAGGCATTTGAGAACAACATGTTCCGCGCTCCAATCTTCCAGCACAAAATACCCGACACAGACTTTCTCATCATTCGTACTCGCCAGCATCTGTATATTCGAGAAGTGAAGGACATATTTTGTGTAGGGCAGCTGTGCCCACTTACTGAAGTTCCTGGTCCAAATTCAAAAAGAGCTAACAATTTTGTCCGAGATTTTCTGCAGGTTTTTATTTATCGTCTTTTCTGGAAAAGTCGTGACGTTCCTCGCAGGATCAAAATGGAGGACATCAAAAAAGCTTTTCCATCCCATTCTGAAAGCAGCATTAGAAAGAGATTAAAACTGTGTGCTGATTTCAAACGAACAGGTTTATTTGATAACAAACATATATTTCTGACAGGAATGGATTCCAATTGGTGGGTGTTGAAACCTGACTTCAGACTGCCAACTGAAGAAGAAATTCGAGCCATGGTTTCACCTGAGGAATGCTGTGCTTTTTATTCCATGATAGCAGCAGAGCAGAGACTGAAGGATGCTGGTTATGGAGAAAAATCTCTATTTGCACCAGAAGATGATAATGAAGAAGAGACACAGATGAAAATTGATGATGAAGTTCGTACAGCTCCTTGGAACACAACTCGTGCGTACATCTCAGCAATGAAAGGAAAGTGCTTGCTGCAGCTCACAGGGGACACAGACCCCACAGGCTGTGGGGAGGGTTTCAGCTACGTCAAGGTTCCCAACAAGCCCCAGTCTAAGGAAGAAACGAAGGAGACCCCAGTGAAGAGAACAGTCACTGGGACAGACGCTGATCTGAGAAGACTGAATCTCAAAGACGCCAAAAACCTGCTCAAGAAATTCGGTGTTCCAGAATCAGAGATAAAGAAACTGTCTCGTTGGGAAGTCATTGATGTTGTGAGAACTATGTCAACTCAGCAAGCGAAAGCTGGACAAGAAAAGTCGACGTCTGGGGAAGATTCAGATTTTGAAGAAATGGGGAAGAACATAGAGAGTATGCTGTCCAACAAGAAAACAAGTTCACAGCTAAGTCACGAGAAGGAGGAGGCGGAGAGGAGGGAACTACATCGGATGTTGATGGGGGAGGGGATGGATGGCAAGGACAAGAAATCTCGCAGTTCGTATGGAGGTCAGGAAGACGATTCTTCACAAAACATGGGTGGTAGAAAGTTAAAAATCACAAGAAAGTTCCGTAACGAGTTTGGAAAGGAGTACACGAGGGTTGAGATTGTCAGAAAACCTCTCGTCATAGAAACCTACGTCAGAATCAGACAGACAAAGGATCCTACCTTCATGTAA

Transcript

CsqKR_Scaf53_2.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12157	DUF3591	Protein of unknown function (DUF3591)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022591	Domain	Transcription initiation factor TFIID subunit 1, histone acetyltransferase domain	Interproscan
IPR040240	Family	Transcription initiation factor TFIID subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf53_2.10 global RNA-seq network