Gene detail

Detailed information of CsqKR_Scaf478_3.29 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf478_3.29	RECEPTOR-LIKE PROTEIN 55	chr15	26815126	26823684	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf478_3.29

AGCACTGTCAATGTGTTTTATTACTTGTGTGTTCCTAAACAGCCTTGGTCTTAAATGTTTCTGATGTAACTAATGTAAGTACAAGGCTTGAAATTAACAGGCACAAGTAGCTCTAGAATGTTTCCATTTGCACCTGAAATGCATTTGTATTATCTAACATCTTCGTGCTAATAAATAGTTCTTTTTTACGTTTATCACAAAAGTTAATAAGAAGCATTTCAGCTTTAAATGTTAAACTAGTAACAAATTACGTAAAAACTAGATGGTTTATAGGCCTATATCTATTCTGTTTTATTGAAATATGACGTAATATTAAAACGATATGAAATCTAATTTTGTCACTGCATGTATTATTTTCTCCATAAATAAATGGAAATAACTAATTTATATCGTATTTATAGACAAGGCCATCACTAGCAGTAATCGTTTGTATTTTATCAGAACAATTTGTTTTCAGTTTTGGCTCTTACCCATGAATATCACAAAATGCCTCAAACATATCATAAATGCCTCTCTGCTAGATTCGAGCAATTTCAAAACTTGTATACTATATAAAGATGCAAATCTGCAGTGTCAGCAGATACCAAAAACTTCATACTGGGTCTTGTAATCACAATTTCCAATTTTCTTTATGTCTACTTTGAACAGTTCATGGTGAAAATACTGAACAGTCACATATAATTATAACAGTGTTGAGAAACATGTGTACATAATAACCTGAATGCAAACAAAAGCTGATGTATGTAAAGTTAGGATGTAAACAGTAGCTGATGTACATAGCTGCTGTTGGAAAGTTAGGATGTATTTGTTTGTGAACACTTGCTTATGTATAGAGTTAAGTGTAAAACTGTAATCAGTGTTTCAAGTCGGTGAGTAAGCATATAGTTCATGAAAATGCCTTCTGATGCCTTTATAAGTTTTCAGTCTTTTCTTTGTGCTATTCTTAATATTGTTTTTGTTTTTCAGTACGGGTAAGAGGTATTGTAACTACTCGTTGTCTAAATCAATTAATATGAATTAACAATGATTTTTGTTTATAATATGGTGCTCTGTATCCTTTGAGATAAACACACTGAAAGCAAATACTAAGGTAAGAAAACTTTTTTATGTTGTTGCTTAGAATATGACTTACCAGACCTGCACCTTTAATTGCCCTTAGTTTCCTGATTATAGAGATCTTATTGCTCCTGATTAGCACCTAATACTTCTCTGGAATGGGCTCTGAGGATTAGCTCTGTCTGTATATTACTGATTATTATAATTTAACATAAATGCTTTTTCTCCTTCTAGGTAACATGTATGTATGTATTTGATGCATGTCTGGTAACGGAGAGTGAAAATTTCATTGTTGCTGTGTGTATTTTTTAACTGTTGCTGAGAACAATGGCTTCTGCAGCTGATTTCAGTGATGACGAAATGCGAGAAAAGCTTTCATCGATAGCAACAAAACTTGAATCTGAGGAACTAGAAAAATTAAAATTTATTTTTCGAGATGCTCTCACGGTAAAGGACAAAATCAAAACAGCACAAGATCTTTTTGATATATTATGTAAACGTAAAATAATAAGTCGAAAAAATATGGCATCCCTTGTAAAGGCTTTGGAGTTGATTCAGAGTGAAGATGCCATTGATATGATTGAGACCTTTTACAGAGAAGAGAAAAGGGACATCTTAAAAAATAAATCATGTGTTTCTGAATTTACTTCTCAACTTTATAAATTTGGTTCTGACATGAATGAAGAAGATGTTGAAAAATTGGCTTTTTGTTATAAAATTAAACAATATAACAATCGATGGGAACTGCTGATTCTGTTAAGCAAGAAAGGTGATTTGAAAAATGTGAAAAGTATTGAAAAGGTTAAAAAAAAGCTGGGGATTCCTTCAAATGAGAGACCAGCACATCAGCAGGAACATCGTCCAACTGAGCAATCATCAGAAACCGCAGGTCAAAATGTAAGAGAATTACCAGATGTGCCTGAGGACACTGTGATTTATCACCATTGCCCTGACTACTCAAATTCCCAGTATAGAGAAGAGCCAAAAGCTGTGGATAACAATGGCCAACCTGACCACACCACAACCAAGAAGATGAGAATAACAGAAATGAAGGAATATTTTGAGGAGAGTAATACATTAGGAGCCGGTGGAAATGGAACAGTTTATAAAGCAGGTCAAAATACAGCAGTAGTCCAGCGTGTGCCTCAGGGATCATTGGATTATTCGCTGTCATCGTCAAAGGCTGATGATTCAAATTACCAGTATAGCCAAAAGCAAGTAACTGTGCATATCTATGGCCAATATGGCAGCATCACAGTGTGTAAATCTTGTTCAAAGTGCAGACAACATTTGCCTGATGATAAACATCGATGCATTGAAGATGTAACCGAGATAATTATATCACAAAAAAATGTGGCTGATGATTCGAATTCCCAGTGTTGCCTAGAGCCAGTAGCTGTGTTTATCAATGACCACCCTGGCAGACAACATTTTTCTGATGATAAACTTCGATGCAGTGAAGATCTAATCCAGATCATTATAATTATTATAGCAAGTCAAAATGCAGAAGCAGCTCAACACGTGCCTCAGCAGACGTTGGATTATTCGCTGCCATCGTCAGAGGCTGATGATTCAAATTACCAATATAGCCAAAAGACAGTAGCTGTAGGTTACGATGGCCAACCTGACCACACCACAACCAAGAAGATGAGAATAACAGAAATGAAGGAATATTTTGATGAGAGTAATAAGTTAGGAGCCGGTGGAAATGGAACAGTTTATAAAGGATGTAAGCAGTATAATGACTGTGACGTGATTGTCAACGTTTTGCATAATCATAATGGTCAAGAAAAGATGCTGGAATCTTTCAAAATGGAGATGATCTCATCTAGAAAAAAGCATCCTTTTTTGCTGCCATTGTTAGCTTATTGTGATGAGAAGCAAGGGATAAACAGGCAGTGCATTTTAATGTATCCATATATGAAGAATAAAGATCTTGATACCCGTTTAAAAGAGGTGTGGGAAGGAAAAGCTACATTATTGTTGGAGGATCGTGTTCGCATTATGTACCAGGTGTCTGCTGGGTTAAAGTTCTTGCACCAAAAAGATGGAAATAATGGAATAGAGATCATACACAGAGATGTGAAAGCTTCAAATATTTTGCTTGATGACATGCTGAATGCTCGACTCAGTGATCCAAGAATAGCAAGAGAGCTTGGTGGTCAGACACATGTGACAATCACAAGTTCGTTGGGCACTCCAGGATATGTTGATCCTGATTTACTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF01335	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45974	RECEPTOR-LIKE PROTEIN 55	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf478_3.29 global RNA-seq network