Gene detail

Detailed information of CsqKR_Scaf478_3.28 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf478_3.28	RECEPTOR-LIKE PROTEIN 55	chr15	26781008	26792379	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf478_3.28

ATGGCATCCCTTGTAGAGGCTCTGAATTTGATGCAGCGTAGAGATGCCATTGAAAAGATTCAGAACTTTTACAGTGGAAAGAATATAAAGAACATCCCAAGATCAGAATCGTATATTTCTCCATTTACTTCCCAACTTTATAAGTTGGGCTGCGACATGGATGAAAAAGATGTTGAAAATTTGGCTTTTCAATATAAAAAAGCAAATAAATACAAAAATCGATGGGAACTGCTGACTCTGTTATGCAAGGAATCTGTTTTGAACGACTTTGCAAGTATTGATACGGTGAGGAAACTTCTGAAGCTTGCCCCGGATAAGAACAGTGAGAGACTTCTCTATCTGCAGGAATATTCCTCACCTGATCAGTCATCAGAAACTGGTCAAAATGTAATGGCATTCCCAGATGTGCCTGACTCATCATTGTTTCCTGATAATTCACTGTCCCAGTCTAGTGAAGAGCCAGTAGCTGGAGATAAAGATGGCCAACACTACAACATCACAGCCAAGAAGATGAGCATAGCAGAAGTGAATGAATATTTTAAGGAGGATAATAAATTGTGTTCTGGAGGAGGAGGAACAGTCTATAAAGGATGTAAACAGTATAATGACTGTGATGTGGTTGTCAAGATTTTGCATAATGATCTTGATAAAAAAAAGATGCTGGATTCATTCAAAATGGAGATGATTTCGTCCAGAAAAAAGCATCCTTTTTTGCTGCCATTGTTAGCTTATTGTGAGGAGAATCAAGAGGAAAATGGGCAGTACATTTTAATGTATCCATATATGATGAATGAAGATCTTGATACCCGTTTAAAACATGTGTGGGATAAAAAAGCTTTGTTATTGTTGGACGATTGTATTCGCATTGTGTACCAGGTGTCTGTTGGGTTAAAGTTCTTGCACCAAGATGATGGACATAACAGAATAGAGATCATACACAGAGATGTGAAAGCTTCAAATATTTTGCTTGATGACATGCTGAATGCTCGACTCAGTGATCCAGGAATAGCAAGAGAGCTTGGTGGTCAGACACATGTGACAATCACAAGTCCGATGGGCACTCCAGGATATGTTGATCCTGATGCTAAAGAACAACACAAAGATTGGCCAGAAGAATTATTAAAGAAATTTGTCAACTTAGCTTGCCAGGCAATAGCTGTTGCTGATGATCGAATTACTCTTGATATTCTCTCTAAACAGCTGCATGAACTTCTCATTAGTGCCAGTGCTGAATTGTGGAAATGTCCTTACATGAAGCTGAAGCCACTTTCTCCAAACTGCAATGAAAACTGCACTCGCTTTTGCGTGGATTGTCTTTCCAGAAGCCAAGAAAACCCACTGTTCTGTCCACAGCATGGGGAATGTCAACCACCAATTGGTCACAATAACATATTTGTCCTGATGGTTTCTGGAATTGGTAAAAATCCAAAGGAGAAAATTATACTTAATTCTGATATTGATAGAATGAAAGAAATTCTGGAGGATAAACATATCATTGGTGTCAGTCCTGATAATATAACAGTGATCAGTGAAAAGGCTGATAAAAACAGTATTTTAAGTGCTGTTGATGAGATAAAGGAAAAAGTGGAAGGCCGGTTTGAAAGTCTTTTCATATTTTACTATACCGGACACCACAATATGGAAAGGGAATTTTTAACTGACGAACAGAAAAAATATCATCTAAAAGAAGAGGAACTGAAAGATCATTTCCGACAACTGAATGCCACATACATGTTGTTCATACTGGACACTTGTTATAGTGGGGGTGCTGACATTGGTGCAAAGGGTGATTATCAAGACTACTCACCTCCCTGCCTTTGGGATGTTTTTGAGTCTGATTTGCAGGCAAAAGGAGAAAAGTCTGTCTGTGTTGTTCAATGGTCTTCATCAGCTGAAAACCAGGCGTCTTATTATGAAGGAGACCAGAGTGCTTTTACCTATGCAATCATCAGTCAGCTGAAAAATGAATGTGTCATTTCTTGTAAAGACTGTTTTTACTGTAATGGTTTTCACAAAAGTGCAAAACACAAGGGCTATATTGACCTTAAAGAACTACATGACTCTGTTGAGTATCATGTTAGGAAAATTAAGAGTGGAAAACAGCTACCAAAACTACATAAAAAACCAGAAGATGCATTTATCCCACCATTTGCATATTATGTTCATAAAGATATGTAA

Transcript

CsqKR_Scaf478_3.28

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45974	RECEPTOR-LIKE PROTEIN 55	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf478_3.28 global RNA-seq network