Gene detail

Detailed information of CsqKR_Scaf44_1.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf44_1.20	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	chr8	20664073	20684005	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf44_1.20

ATGGACGTGAAAATCTTTTCACTTCTGTGTTTTATCTCCTTTCTAGCTTTAGCTCATGGGTGGTCGGGACACGTGTGTTATCGAAGAGTGTGTTATTATGAGCGAGAACGCATATGTACTTTCAGATTCTGGTTTATCTGCTGTTCCTATAAATATGTCTGGAGGGAACGATACAGATATGATCCTTACTGTTGCATGGGCTGGAAGGGAACGAAGCAGGATTCAACTAGCTGCACCGTTCCTGTCTGTCGTCCAAACTGTAAAAATGGAGGTACCTGTGATAGACCAGATCATTGTCGCTGTCCTGCTGGCAGAGATGGAGATAGATGTGATGGATTGAAATGTTCACATCTCACTGCCTGTTATCCTGGTGCGTGTCAGCGAGACCCAGGCGGTACAACGACTACCTGTATCTGTGAGGACGGATTCAGTGGTACAAAATGCCTTACAATGGATTCTAAACTGACACCTTCCATCAATGCCATCCAAGCACGAATGTCATTCTGGATGAGAGGAATTGCTAATCCAATGGAGAAATATGCCTTGACTGTGGATTCCACCAATAAGAAAGAAACAGATTTCTTGTGGACAAATCAGTTTATGTTTAACTGGATCAACATCACTGCAGTCAGTCAGTACCTTGGAGAAGATCCACCTGATAAACCCACTTGGATAAGAAAGGCAGAGTTTGGCATAACACATGCTGAAGTGAATATCCTGCTAACTAAGAAATCTTTTCTAGATCCAACCAAAAAATATATCAGCAAGAATGAAACAATTGTGTGTAACCAGACTTTTACATCTCTGAATATTGGTCCCAGGTCACCAGCCCCAGATGTAGTGAACTGTTCTATCAGCCTACCAAACTTTGACAGGCAGCTGGAAAATGGTGACAGACTGACAGTGACTTTCAGAACAAAAAGTGGTGGTTATCGTGAAGTAGTAAATTCAGATAATCCAAACAAATGGTTTGCTACAGATGATTTTGAAGGACACTGGGCTGAAAAGGCTGTTGAGTACAGATTTGATAGAGATAAACCTAAACATTGCAAGTTAACAAATTCAAGCTGCAGCAAAGATATATTCAGTGTAGACAATGATATCCATGTCACAAATAATCCAATTGTTTTGAACTGGAATGGATGGACAGATACTCTGTCAGGAATGTTCCGCTATGCTTGGGAAGTTTTCAAACTGGTGCCTGACATTAGTGGCAGACTGCATGAACAGTATCCACTGCGACCTCTTCAAATAACAGAAGTTTTGCAAGAAAATCTCAGTAGCACAGAGTCTTCTTATCAACCGTCTGAACCTGGCATGTACTCTTTTATTCTAGAAGCATCCGACAAAGCAAACAACTCTGTGTTTATCAGACGTCTTTGTCTGTATGATCCATCATCAAAAATCACACTGGGTTCCAAAGGACTGCAGGTAGATTCAGCATCAGGATTCGATAAAGATGTATGGACATCTAATATTAGCAGTCCACTAGTGGTGAGCTGGAAAGACCATTTTGTAAACAAGTTTCATGAAGACAACAAACTTCTGAATGAAGTGAAAGCGTATCCGCCACAGCTGGAAGGTGGTTTGAAGAACATTAAGCAAGATGATAACTACGGTGAAAGAACTATTCGTGAAATACCTAACAGTCGTGGTATTGTCAAGTTTGAGATAGCACATGCAAAAGACAGTGATGGAGGTCGCGGTCAACAAGAACCAACCACAGGATGGCAGTCTCTCAGTGCATCAACACTTAGCACAACTGTGACTCCAAACAATCCAATTCGAGGTGACACTGTGACCATCTGGGTCCGAGCTACTGACATCACTGGTAGAAGTAAAACAGATAAAATCAAAGTTCACTTTGATGATTCACCTCCAAATGCTCTGGAGAAAGTCAGTTTTACAAAAAATGTGCCTGGCAAATACCCATTTGAATCAAAGGCTTTTCTGACGGTCTCTGATTTAGAAAGTGGAATTCATCAAGTGAATTTGTCTGTCATACAAATCAGTACAAATTCTGAAATAAGAACACAGCCTTACATAATTTCAACTATACCTAAATCAGAGTGTCAGGATGAATTACAAGACAACTGTTTCTGTTCAAGAGACCAGCCAGAGATGTGCCAGAAGAAAGAACAAATCTTGGATATCAATAACTGCTGGCTGATGACCAACAAATCAGAATCAGAATCACTTCAGCTGAAATTTAAAATTATTAATAATGCTCAACTCTACAAGGAGCGTGCAGTGAATATTTCTAATCTGTTATCACTGAATGGTACAAATTCCTTCCTTGGTCCCATGCATGTGAGCAGTGAAAGTGTGAGTCAGATTGGTGGCAGAATTACATGGGATCATGCCCCTGCTTGTTATGAACGGACAGAAATATGGATAAAGTATGGGAAGAAAGGTGAAAAGCTAATTAAAAAGAAACTACACAAAGATGCAGTCTCGGAAGACCTGACTGGACTTGAACCCGGTACAAACTACACCATACAGCTGATAACTCAGTATGGAGAGGTGATGAGTGAGCCTGTTAACTTCTTTCTTGTCACAGAACCTAGACCAGAATCAGCAGGCTTGAGTGGGGGAGCTGTCGCTGGTATTGTTATTGGAATTTTGCTTCTGATTATCTTTGTTCTGCTGCTTGTGGCATTCTTACTCTGGAGGACGGGTCGATATCCATGGAAACGACAAAAACAATTGAAGGCTCAGATCACATATCCATTCACAACCCTGTTGCAGACACTAAAGTGA

Transcript

CsqKR_Scaf44_1.20

TATTATTACTTGTTTTGTTTTCCTTTGTGGGCTTTTTTTTTTTTTTAAATTTGGCACTGGATTTTTCCTTTGACGAATAACTTCCTGATCCACAGCGCCTTATTCATTTTCGAAGAAACATCAAATCAAGATGGACGTGAAAATCTTTTCACTTCTGTGTTTTATCTCCTTTCTAGCTTTAGCTCATGGGTGGTCGGGACACGTGTGTTATCGAAGAGTGTGTTATTATGAGCGAGAACGCATATGTACTTTCAGATTCTGGTTTATCTGCTGTTCCTATAAATATGTCTGGAGGGAACGATACAGATATGATCCTTACTGTTGCATGGGCTGGAAGGGAACGAAGCAGGATTCAACTAGCTGCACCGTTCCTGTCTGTCGTCCAAACTGTAAAAATGGAGGTACCTGTGATAGACCAGATCATTGTCGCTGTCCTGCTGGCAGAGATGGAGATAGATGTGATGGATTGAAATGTTCACATCTCACTGCCTGTTATCCTGGTGCGTGTCAGCGAGACCCAGGCGGTACAACGACTACCTGTATCTGTGAGGACGGATTCAGTGGTACAAAATGCCTTACAATGGATTCTAAACTGACACCTTCCATCAATGCCATCCAAGCACGAATGTCATTCTGGATGAGAGGAATTGCTAATCCAATGGAGAAATATGCCTTGACTGTGGATTCCACCAATAAGAAAGAAACAGATTTCTTGTGGACAAATCAGTTTATGTTTAACTGGATCAACATCACTGCAGTCAGTCAGTACCTTGGAGAAGATCCACCTGATAAACCCACTTGGATAAGAAAGGCAGAGTTTGGCATAACACATGCTGAAGTGAATATCCTGCTAACTAAGAAATCTTTTCTAGATCCAACCAAAAAATATATCAGCAAGAATGAAACAATTGTGTGTAACCAGACTTTTACATCTCTGAATATTGGTCCCAGGTCACCAGCCCCAGATGTAGTGAACTGTTCTATCAGCCTACCAAACTTTGACAGGCAGCTGGAAAATGGTGACAGACTGACAGTGACTTTCAGAACAAAAAGTGGTGGTTATCGTGAAGTAGTAAATTCAGATAATCCAAACAAATGGTTTGCTACAGATGATTTTGAAGGACACTGGGCTGAAAAGGCTGTTGAGTACAGATTTGATAGAGATAAACCTAAACATTGCAAGTTAACAAATTCAAGCTGCAGCAAAGATATATTCAGTGTAGACAATGATATCCATGTCACAAATAATCCAATTGTTTTGAACTGGAATGGATGGACAGATACTCTGTCAGGAATGTTCCGCTATGCTTGGGAAGTTTTCAAACTGGTGCCTGACATTAGTGGCAGACTGCATGAACAGTATCCACTGCGACCTCTTCAAATAACAGAAGTTTTGCAAGAAAATCTCAGTAGCACAGAGTCTTCTTATCAACCGTCTGAACCTGGCATGTACTCTTTTATTCTAGAAGCATCCGACAAAGCAAACAACTCTGTGTTTATCAGACGTCTTTGTCTGTATGATCCATCATCAAAAATCACACTGGGTTCCAAAGGACTGCAGGTAGATTCAGCATCAGGATTCGATAAAGATGTATGGACATCTAATATTAGCAGTCCACTAGTGGTGAGCTGGAAAGACCATTTTGTAAACAAGTTTCATGAAGACAACAAACTTCTGAATGAAGTGAAAGCGTATCCGCCACAGCTGGAAGGTGGTTTGAAGAACATTAAGCAAGATGATAACTACGGTGAAAGAACTATTCGTGAAATACCTAACAGTCGTGGTATTGTCAAGTTTGAGATAGCACATGCAAAAGACAGTGATGGAGGTCGCGGTCAACAAGAACCAACCACAGGATGGCAGTCTCTCAGTGCATCAACACTTAGCACAACTGTGACTCCAAACAATCCAATTCGAGGTGACACTGTGACCATCTGGGTCCGAGCTACTGACATCACTGGTAGAAGTAAAACAGATAAAATCAAAGTTCACTTTGATGATTCACCTCCAAATGCTCTGGAGAAAGTCAGTTTTACAAAAAATGTGCCTGGCAAATACCCATTTGAATCAAAGGCTTTTCTGACGGTCTCTGATTTAGAAAGTGGAATTCATCAAGTGAATTTGTCTGTCATACAAATCAGTACAAATTCTGAAATAAGAACACAGCCTTACATAATTTCAACTATACCTAAATCAGAGTGTCAGGATGAATTACAAGACAACTGTTTCTGTTCAAGAGACCAGCCAGAGATGTGCCAGAAGAAAGAACAAATCTTGGATATCAATAACTGCTGGCTGATGACCAACAAATCAGAATCAGAATCACTTCAGCTGAAATTTAAAATTATTAATAATGCTCAACTCTACAAGGAGCGTGCAGTGAATATTTCTAATCTGTTATCACTGAATGGTACAAATTCCTTCCTTGGTCCCATGCATGTGAGCAGTGAAAGTGTGAGTCAGATTGGTGGCAGAATTACATGGGATCATGCCCCTGCTTGTTATGAACGGACAGAAATATGGATAAAGTATGGGAAGAAAGGTGAAAAGCTAATTAAAAAGAAACTACACAAAGATGCAGTCTCGGAAGACCTGACTGGACTTGAACCCGGTACAAACTACACCATACAGCTGATAACTCAGTATGGAGAGGTGATGAGTGAGCCTGTTAACTTCTTTCTTGTCACAGAACCTAGACCAGAATCAGCAGGCTTGAGTGGGGGAGCTGTCGCTGGTATTGTTATTGGAATTTTGCTTCTGATTATCTTTGTTCTGCTGCTTGTGGCATTCTTACTCTGGAGGACGGGTCGATATCCATGGAAACGACAAAAACAATTGAAGGCTCAGATCACATATCCATTCACAACCCTGTTGCAGACACTAAAGTGAAAAATGTGAAGAAACACACATCACTGGCAGTGACTAATAATACCTACTCGCCAGACAATGAGATCTACTATTATGGAAGTATGAACTTCGAAGCAAAACAACCATGGTATGTCCAGCCTGATCATCTGACATTATTGAAACTCATCCAGACTGGAAGATTTGCCAAAATCAACATAGCTAAATGGAAAAGTGCTCCAGAAGGACATGACACTGTTGTGGCCAAACTGGTCAAAGATAACCACTCAGAAGAGGATGTGCTGCTTATGATGGCCAAGATAAATTTTGCAGCCACAGAAGTTGGAGAGCATCCAAATGTCCTTCGTTTCATGGGAGCTGTTGTTGACAATGATGAACTGGGTCCTATAATGGTTGTTGAATACTGCGAGTCTGGTCAGCTTGACCAGTGGCTAATCAAACAGCAAGGACAATCTACAGATGATACAATTGAGAAGATTCAGAGAATTGCTATGGAGATTGCTCAGGCTATGTCATACCTGGCCTCAAGAAATATTGTACACAGGAAACTGGCAGCAAGAAATGTCCTCCTGACGTTCATTCTTCAAGCTAAAGTTACTGGATTTGGACCTCAACGTGGAGACAGAGAAGATGATGACAATTTAAAAGGAGATCGTATTCCTGTCAAGTGGACTGCTCCGGAATGTCTACAAACGCTGAAGAACGCCAATGAAAAGAGTGATGTGTGGTCTTATGGCATCGTTCTTTGGGAAATATTTAGTCTTGGACAAGTTCCCTATGCCAACATTCGAAGTCGTGATATTGCACATAAACTGAAAAGTGGATACCGACTTAGCCGACCTGAATTCTGTGAGGATATACACCACAAAATGATGCAAGAATGCTGGTCAGGAAACCCAAATGACAGGCCAACATTTACATCTCTGGCTAACAGATTTGAGGCTACATTTGGTTTGCGACCTTCATCAGATGATTTTTATTACTATCAGAAGTAATAAAATGATAATCTTCTGAGAAGACAAAAATAGACAGTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050969	Family	Developmental Signaling Modulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf44_1.20 global RNA-seq network