Gene detail

Detailed information of CsqKR_Scaf43_40.3 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf43_40.3	PBS LYASE HEAT-LIKE PROTEIN	chr8	4067055	4073686	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf43_40.3

GTATTTGATGGATGTAGGTGTTGTTCATCTTTGAATGTGAAATCTGTTAAGGATGCTGTATATTTATGTTTTTGTATTAATAATTTTTAAACAAATCTGATTTCAGGCATAATGACAGCCAAACTGCTTCCACCCTTTCTCAAATGTTTTGATGATCCGTACATGTCTATCCGGCTGGAGACTTGTATTACAAGTGGTAATCTGCACATCAAAGATGAACAGGTTGTCAGTAAGCTGGTTCACATAGCTTCCTTTGATTCAGTTTGGAAGGTCAAAGCCACAGCAATACAAGCTCTGGGTAAGATTGGTGTAACGAGTGAGAAGATCTGTGACTGTCTGCTGTGGGCTCTGCGCTATGAGGAAAAGCCAACAGTGAGAGCAGAGGCATGTCACACGCTGATGTTGCTGGAGTACGACGAGGATGAAATGATTGAAGTGTTGCAGGATCGACTCCTTGTAGAATCAAGTAAATTAGTTAGAGATGAAATGCTTGATGCACTGTATAAGTTTGGTGTAAACAGCTCAGATGACATGGACATGGTGGCCCAGATTAAGATGGAGGTGCGCAAACTGTGCACCCGCAACATCATTGCAACACACATCATGAAGGATGAAATGGATGAAACGAAGAGGGAAAATATTGCTCGATTAATTTATGAGTCAGACAAGGAACTAGAGAGAGTTAAAGAACAATCAGAAGTAATGTTTGATGAACTAAGTCGAAGAGACAGCTTAAAATCTGCAGTGATGAAGACTGAAGACTTTGTGGGAAGTCCACAGCCAAGCAGAGAAAGTACAGCTTTTTCATTATCAGCTGACAAAGAACTGGAGGACATAATGACTCGCGAAGATACAAATGAGAACATGTCAAGAGAAAACTTCACAGAGTCTTCAAAATCAAGAACCATTTCAGGAAAGTCACTGGCTTCCTCAGCATCAAAGTCTCAACCAGGAACATCAGACCTTACATCCTCAGGTAAATCTGGAGATGGTACTAAATCAACTAATGAAAATCAAAATGCTGAAGATGATGAAGAGAAAGCATCAAACGCCATTCCATTGTTGGAAGTGTCAGAAGTGAGGACATCAAGCAACTTGTCCACAAAGGCAGGAGTATATGCTAACTCTGTAATGTCCATTGATGACATTGGCAGACTGTCTAGAATGAGCATGGGCAGAGCATCTCAGCGAAAAGCTTTACTCAGTAGAGACACTCAGATAGAAAGGGACAAAATTGCTTCATCATCAATGAGGACGTTTCTAGGTCTGGATGCTCGTTACTCCGACATGTTGCCACTACTGGATCAGATAGATCGTGGTTTCTCAGCTCTTGATCCTCCAGCTGAATCTTCTCAGGGTAAAGTTGCTGGAGATGGTTCATATATTTCACAAGATTCTTCAGGATCATCAATTCTGAATTTGATTATCAAAGACAGCTCCTCTAAATCTGAAGACTTTAAGTCTGAAAGTTTTAGTGGTTCTTCCTCTGAGTCAGCTGATGATAGTGAAGCTGCAGCTCATTCAGAAACAGTTGAAAATATACGGGATGAAATTGAAGCAACTAGAACATGTTTGACTGTTCCAACAATAACAATAGATACAGCAAGTGAATGTGATTTTACCAGCGATCCTGGAGATATTACATCCAGATCTAAAGTTGATCTAGAATCAGATGAGCATAATGACGAAATTTTGCAAGATCCTAATGTTGGGGAAATGGAATCACAGGTAGTGGATGGTTCAAAAATGCCAGACACACCTTCAGAAACAACTGATACAGACAGTACTTCGAGTTACCAAGTTACTGAAGAAACTCCAGAGGTACCTCATACATCCACTGTTGCAACTAATGAAGCTGTAGCAGTCCTTGATGAAATTACAGCAGCATCTCAAATAGCTACAACAGTGCCTGAGGAAGCTACAGCAATTGTTGGTGACACAGTAACAGAATCTGAGGATAGTATTGCAGTGCCTGAAGAGATAACACAAACAACTTCTGAATCAGAAGATCCAACTGCCGGAAAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13646	HEAT_2	HEAT repeats	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12697	PBS LYASE HEAT-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008612	Biological Process	peptidyl-lysine modification to peptidyl-hypusine	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0019135	Molecular Function	deoxyhypusine monooxygenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf43_40.3 global RNA-seq network