Gene detail

Detailed information of CsqKR_Scaf41_9.39 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf41_9.39	PHOSPHOPANTETHEINE TRANSFERASE	chr6	15718594	15727986	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf41_9.39

ATTTTTCATAGCTGCCCATGTATTCAGAAAGTTTGATGTTAGATTTAGTTTGTACATATATTGGGAATGTTTTAAGGTTTTTAGGTTGAACGAATAAAAGGGAGGGGCTACAAAAACTAATAATTATTCATTTTCACAATTTACATACAGAAATAATTAATCCATGAACACAAATTTATCCATGAATTATTTCCTTTTGATCAAAGATCTCCCAGGAATGGTATTTATTACTTCCAGCAAATGGACAATATTATTTAGCAGAGACAGCTTCTCATTCGACCACATGTTACTAAGAGTGCCCTCAACTTCAAATGATGTTTAATACTGAGGTCAGGATATGATTGGATTTTGTGACATTGAACCAACATGTCACAGTGATAGTAACACATTGCAATGACTGGGAGGTGTGTAAGACTTGGGGTCAAATGTAAAGTTTGGCAACCCCTGGAGTCAGAGTGGATGTTTGCATCACAATGTATACAGAGAGAAGAAAAAGAGAGAATTGGGAATTTCGTATTCAAAAGGGATGCCAAGTCAGCTCTGATTGGCAGACTTCTGATGCGAAAGGTCATAGCAGATATGACAGGAATTCCATATAAAGATATAATTATTGGCAGGACCGAGAAGGGGAAACCAGTTTTGAAAAATACTCTTCCTCAAGAACTTCTCAGTTTTAGTTTTAACCTTTCTCATCAAGGAGACTATGCTGTTGTGGCTGCTAATTCAGACAGACTTGTTGGTGTGGATATTATGAAGGTGGAACCCAGAGGCAGGTCTATAGAAGAGTTTTTCAATACAATGAAAAGACAGTTAACTGAGCAGGAATGGCAGACATGTTTGAAAGAAAGTCTAGTGAAGGCTTTGGGTATAGGAATTGGATTTGAAGTTGGACGTCTAGATTTTCATGTTCATACAACAGATGTGTCACCCAATCAGACTGTGTTAAGTTCTGTAGTGCACATTGATGGTCAGCTGAGTCAGGATTGGTCGTTTGAAGAATCAATGATTGAAGATCACTGTGTTGCTGTAGCAGTAAAATCAACACCAGAACAACAAATGTCAGATTTAAAGGAAAGGTTTGAGAAGATGAAGACAGAGAAAAAGCGATATGAAGGTGTAAACTTGTATGTTAAGAATCTTGATGACGTTATTGATGATGAGTACCTCAGAAAAGAATTTTCGCAGTTTGGAACCATTACTAGTGCACGGGTTATGTGTGAAGGTGGCCGATCAAAAGGATTTGGTTTTGTTTGCTTTAGTTCACCTGAGGCTGCTTCTAAAGCTATTGCTGAAATGAATGGACATATTATTGTTTCAAAACCATTATATGTTGCACTGGCTCAGAGGAAGGAAGATCGAAGAGCACATTTAGCATCTCAGTACATGCAGCGCATGACAACCATGCAGCAACCATCTGTTCCATACAACCCACAGATATACCAACCACCTGGAGCAGAATACTTCACACCTCCAATACCTGCATTTGTACAAGCAATTCCACAGCCTCAGAGAGCTTATTTTCCTCCTCCAGTACCACAAGTTGCAGGTCCTGGGTGGCAGATTCAGGTTCAGCCCAATCAACCAGCTGGAGCTTATCAAACAATGCCAGCGTGTCAGATGAGGAACCCAGTACCAGGTAGTCCAAGTCAGATGCAGATGTGGCCTGGTTTAAACACTCAACCAGTCATAGACCAGACAGCTCTTCTGGCTCATACTGGTCAGCAGATGACCATTCCACTTGGAGTACCAAGTCCAGCCCCACCAGGTGGTCCAGCAAGGCCAGAAGCACCACTTACAAATCAAATCAGACAACAACATAGTAGTCCCACTGAGCAACAACCTAAAAAAGATGGCCTGCAGTTTACCATTGTCACGGTGCAGGAGTTACTGAAGTTCTGTCAGCCATTACCTGGAATGGAACCTGATGTGGATTACTGGAATAAATTTCATTTAAAATCAGAAGAACCTACCAAAAGATGATTTTAACCATTTTGTCTTAGGCAAATTAATTAGCAGATCTATAAAAAAGATTTTTTTTTTTTTTTTTTTTTTAATATATAATTCTTCCAAACAAATATAATTTTTATGTGTGAAAGTAATCTCCCAATGTTTGCCGTTTCTGACTGAAAGATTTTTAAAAAAAATATATATATATATATGGGTATGGAATGATTGGTCTAAGAATCCCATTAGCTATGTCTTTTGTTCTTGAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01648	ACPS	4'-phosphopantetheinyl transferase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR008278	Domain	4'-phosphopantetheinyl transferase domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR037143	Homologous_superfamily	4'-phosphopantetheinyl transferase domain superfamily	Interproscan
IPR050559	Family	Phosphopantetheinyl Transferase Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12215	PHOSPHOPANTETHEINE TRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008897	Molecular Function	holo-[acyl-carrier-protein] synthase activity	Interproscan
GO:0019878	Biological Process	lysine biosynthetic process via aminoadipic acid	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf41_9.39 global RNA-seq network