Gene detail

Detailed information of CsqKR_Scaf41_42.3 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf41_42.3	JNK/SAPK-ASSOCIATED PROTEIN	chr6	19080371	19109170	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf41_42.3

ACATGACCCATATTTTTGCTTCTGCAATATGGTGGGTGATATGTGTCAAAAAGCGAGAGATGATACAAGAGTTACCATTTCTGTACATTTTTTTTCCTTCGCCAGGCTGATCATTGCAATTCTTTAAGAACATTACATTTTAAACTTGTTGTGGTACAAGACATTTTACTCTACAAAAATGGCGGAAACAGTATATGGAACCAACGAGGAAGGACATATCATGTCTGAAAAAGTGACAAGTCTTGCGAACACAGTTTATCAAGAATTTGAAAGGATGATAAAGAAATATGACGAAGATGTAGTAAAAGAACTTATGCCGCTGATTGTTGGAATTTTAGAAAATCTTGACATTGCTTACGCTGAAAAAGGCGAGATAGAAGTTGAGATAGAATTATTAAGAGATGACAACGAACAATTGCTCACACAATATGAAAGGGAAAAACAACTCCGAAAAGCTGCGGAACAGAAATATCTCGAAATGGAAGATTCGGTTGAAGGAGAGAAAAAGGACTTGCAAGAAAAAATAGAAAGTTTAGAGTCCATTGTAAGAATGCTTGAACTGAAATCAAAGAATGCTGCAGACCATGTATCTAGGCTGGAAGAAAAAGAAGCAGAAATGAAAAAGGAATACAGCAAGTTACATGAAAGATATACTGAGTTATTTAAGACACATATGGACTATATGGAAAGAACAAAAATTTTGATGGGAACAGATAAACTTTCAGAAATAACTGGAAATAATCAACGGTCCAGGGGTGGTATCCAGCTGCCATCTCTTAGACCAGTAAGTATGTTTGTGCAGAGCTCTCCTAGCCAGGGTGATAATAGTCCTATGCCATTTGATCTGATGTCACCACACAGTACTCGGGATTCCAATGTTAGCCTGAAAAGTGAGCTCAGTGATCTAGACTCACCAGCCACACCAAAGGAGAACCAGACTCGACAGACTAGTGACAAAAGCCAGCTCACGGATAATATTAATGTCACTGAGCAAAGTACAACCACAAGCACAAAACACTCAGACACTCCAACTACTACTACTTGTACAACTACACCTAACACACAAGATGTCTCAGGCAGTGATGAAGTCCAAATGAGAGTTCATGCAACTGTTGAACCCACAAATGCACAACAGACTGAGCCACAAATTGTACAAAATGACTTGCATATTAGTCAAAAAAGTGATAGCACTGTGCCAAATACTCAAACTATGGAATGTGATACACAGGGAAAAAACACAGATGTCAAATATTTCCAGCGTTTAAGTTCTGATGATGGCTTTGAAGAACACCATCTCAATTTAGGTTTTGATTTATCTCGAACTTTACAAAATATAGTTGCCTCCACTCCAGAACTTGATGATGATTCTTATGAGAGTCAGCTATCCAATTCTAATAATACAAGAGCTCCTAGGAGAAATGACAACTCCATATTTGATGAGTTATCCACACAAGGTGCTGACATGGGTGATTTTGGTGCTGATGTTACAGGACGAGGTGTGAATCCAGCAGAATTTGCATCAACAGTCAGTGACAGTTTCTTTGGAATGGGAAAAGAACTAGAGAATCTTATTTTAGAAAATACAGAATTATTAGCAACCAAAAATGCCTTGAATGTTGTCAAAGATGATCTTATTGCAAAAGTTGATGAACTTACAAGTGAACATGAGATCTTAAGGGAGGAGATAACATCATTACAGACAGTGAAAGGACGTTTACAACTTCATTTGCTGCATTAGAAGAGGAACTTAAGAAGACTAAGGAAGAAATAGAGAAGAAAACACAAGCTACAGCTGGAGATGAAGAGGATGATGTACCTATGGCTCAGAGGAAAAGATTTACAAGAGTTGAGATGGCCCGTGTTTTGATGGAACGTAATCAGTACAAGGAAAGGCTGATGGAGTTGCAGGAAGCTGTAAGGTGGACAGAAATGATTCGTGCATCACGTGAACATCCCGGTGAGCTTCCATCCAAAAAGAAGTCATCCATATGGAATTTTTTTGGTAACCTGTTCAGCTCTCCTAATAAACCCAAAAGAACCACACCTCTTCCCTTGGCTACAGTGAAGTACAGTGCACCTACAACTCAAGTCCAGCCAGTGGGAGACCCAAACAAAAAACAGAGAGAAAAATACAACTTGGGACAGAAATCTAAGGCCTTTGACTTTTTACAGGATGATGTAACATCAGAGAAAGTTAAAAAGGAACGAGAGAAGGAAAGACGAGAACAATATAAACAGGTTCGAGCTCATGTTAAAAAGGATGATGGAAGGATGCAAGCTTATGGCTGGAGTTTGCCAGCAAAATTCACACCTCAAATCTCTAAAGAGTCTCATGGCAAGAGTGGAGTTCCTGTCCCAGTTCCTGTTTACTGCAGACCTTTACTGGATAAAGAAACAGGGCTAAAGATCTGGTGTGCTGCAGGTGTGAACCTAACTGGAGGAAGGACCAGGGATGGTGGATCAATAGTAGGGGCCAGTATCTTCTACTCCAACCCACCAGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09744	Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	Family	Interproscan
PF16471	JIP_LZII	JNK-interacting protein leucine zipper II	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019143	Domain	JNK/Rab-associated protein-1, N-terminal	Interproscan
IPR032486	Domain	JNK-interacting protein, leucine zipper II	Interproscan
IPR034743	Domain	RH1 domain	Interproscan
IPR039911	Family	JNK-interacting protein 3/4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13886	JNK/SAPK-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005078	Molecular Function	MAP-kinase scaffold activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008432	Molecular Function	JUN kinase binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0019894	Molecular Function	kinesin binding	Interproscan
GO:0030159	Molecular Function	signaling receptor complex adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf41_42.3 global RNA-seq network