Gene detail

Detailed information of CsqKR_Scaf403_4.69 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf403_4.69	E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN	chr3	21694285	21701127	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf403_4.69

AAGAAAATGGCGGAAGATGAAAATGAATTGTTGTTGTTTGCTTTGTTTACATTTTGATTCTTTTTCGGTTACAGTTACCGTAAAATAAGCGGAGATGGCAGTTAAAAATTGCGAGTAGTTTGATTATATATGTACAATGGGACTCAAACTGAGTTCAAACAATCCCCCTCGAATGAGAACTTACTCAAGTAGTAGTCCAGGGCCAAGCACAGGAAATCCTGGACTTGCTATGGCAAGAGCAGAGGCATCGAGTTCGAGGGCGCGTGCCCGTAGTTTGGGCAATTTTCAAACCACACACTCCCCAACTTTAGGGATACCCACAGCTAATGGTGGGGCACACAGGAATAATACACCAGATTCAGATTCAAGTACACCTGATGACGTACCTTTGGCAAGGGCTTTCGCTCATTCTTTGCCTGTTCATCTTTTTGCCTTACAAGGTATCAAATGTCCAGTATGTTCCAAGTTTATTGCTCCTGATGAACTAGAGTGCCACCTTGTAATGTGTCTCACTAAACCCAGAATAACCTATAATGAGGATATTCTGGCTGAAGATAAAGGAGAATGTGTTATTTGTTTTGAAGAACTTGAGAAAGGAAATGTAATAGCAAGGCTACCTTGCCTCTGTATATATCACAAATCATGTATTGATAAGTGGTTTGAGGTTAATCGATCATGTCCAGAGCACCCCTCAGAATAGCAACCTGTGATTACACAAATCTTGGAATTGAACAAAAGAGGGAAGTTATTTCCCTTGTTGAGACAACACCAGAGTGTTTTCTTTTGCTGAGAAATATGAATTACATGCTTTCTTAGCTAAACAATCACTGAATTTTGCTTATGTGAAAATCTCCATGTATATGTTTTAGTAAATGTTTTTACTTCATCTTGGATATATGCTATTTTTTGTTATAAAAATATCTTTTTATAATTTTTTTAAATATTAATTTATTAAGTAATGAAATCAACAAATAAAAACTGTTAAAATTTTTATTGTTTGCTTTATCTCATGGAAATGAAAATATAGAATATAGATATATTTATCGTTTGTAAATTAAGTATTATCATAAAAATAGGGAGATCTTTTTTTCACATTTACAAGAATTGGCCAGTGAGAATCAAAATACTTTTTTTGATTTGATTTCAATAATAAAATAAAATAAAATAAAATAAAATAAATAACCTATGTGTAATTTATTATTATCAAATGTTGAGAAATATCATAATTCAGAATTAATCACATTTACCAAAATTTATATAATTTTAGATGATTTTTTAAACTGAATTTAACTTAAAACTGAGATGGCATATATCTAAAGTGTTGAAAAATATTTATACTGGTACAAGATCTTCAGTGCTATCATATTGTTTATATACAGATGATAACTTGGATTGGTTAAAGACTATGAACTGCATATTTTTGTGTTCCCTACCAAGACATACATAAACTTTTACTTGCAAAGGAATATTAATATAAGAATGTATATTTGAAAATGTGTGGATGAATGTGAATGCTTGAGCATTTTGTTTGAGAAAGAATGTGTGTATTGTGATCATGCATAATGGACTATTACCACATATTTGGTTTTAACAGTGGTGTATATATTGTGATTTGTTCATTGTTGGGTTCTTCTGGTACAATATAAATGTTGTAGCAGTACAACACTAAAAATCAAACTGTGCTGTCATATATTATGATGAGATAATATTGAGCCAAACCACTGTCCTTATAAGCCAGGCCTTTTAGTCACTTCAGATAAACATTTATTTTCTAATATTTCCCATTGTTCCACACCTTTCTTTTTCTTATTCATTTTCTTTTTATATATTTTCTTTATATTTTTCCTTTTAATTTTTTATTTGACAGGAAATTTCTTTATTTTTATTTTTATTATTTTTATTTTTTTATTTTGCTACTTTTGATTTTGCTTGGACCACTGAAAAATTATAATAATATTGCAAATTTGTACTGTGCTCGAAAGCAGTATATTATTTATTAATTTGAATTTAATTTTTATGTATAAATTCAGTTATATATTTATTTATTTTTAATTAAAAGTTGTGCACATATAGCAGAATAAAATAAAAGACTTGGGTTATGAAGATGAAAACCACATGTAATACAGTGCTACCAATTTCTGTATGTGCTTGTATAATGTACAAATGTTTATTTTTTGACAGGAAATATTCTTTGTTTTATGTTTCTTTTTCTTTTCATTTTTTCATTTATTTTTTTTAATGTTACTTGTGTATATAATTAAAAGGATGTGTTCTGTATTTTGCATTTATTTAACTATTTAAAAACACGAAAATAAAATTCTAATAGAATAAAAGTATGTAAGAAAAAATAAAAATAAAAAAGCTACATTAAAGCCACTCAGCTGAAAAGAATATGTAGAATTGTGATATACATGATAATAAAAATTCACTAATGTTCATATTAATATTGAACATTGAAGATGTGTTTATTTGTTGTAATACTACATTTTAATTCTTTGGTGTTGCATGTTTAATAAATAAGGGGTTTTGTAATTTACTTCTTCATTTATAGATGTATTATTTTCTGATTCTGTGTATTTGGTTACTTTGTTAAAATATTTTGTTATAAATAATTAGCTGTTACCAAAAACCAATAGTCTAAGTTGTCAGGCATAAAAAATAAATAATCAAATATTTATTTCTTGTACATTTTCTTTTGAAGATTATTGAAAATAAAATAATCTTAACACATTTTTGTTCATCTCTCTTTGTAGTTCAGAATTGATTTTAATAATTTGAAGTATATTCTATATGGATACATTTTTATAGGTGCACAAATGATGGGGGTTTTGGGGTGTGTTTTTTTTTTAAAGATACTTTAAAATAATAATAAATGTGTCCTATGTTACTGATGTTTGGTGATTCAAAGTTTATTAATTCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR051878	Family	ZNRF ubiquitin-protein ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46661	E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936	Biological Process	protein K48-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf403_4.69 global RNA-seq network