Gene detail

Detailed information of CsqKR_Scaf3_9.32 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf3_9.32	CARNITINE O-ACYLTRANSFERASE	chr1	7342821	7379266	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf3_9.32

ATGGTTACCTGTCTGTGTGAAGTGTTCATCTGGTCACTAAAAAATCAGTATTTTATACCAGATGACACTATAGGCTGTCATGTCTACCATGATAAAGGAGAACAAGCACGTGATATGATTTGGTCACCAAGAAATAAACGTCCTGAGAAATTGCGTGATACACTGAAGGAAGTTGAGGAGTTAATGAGTCAATACAAATGTGTTCAAGTGTACTGGAGAAGTGGACTGGTTTTACAGTTGGTGTTGAGCAATTGCTGTGTAGTGACTTTCATACTGTCTACATGTTCAGGAGATATCCAAAAGATAATTCTCGATAAATCATTAGTTGGAAAAATTGCTGCAGAAACAGTATCTGATGTTTATCTTACTGACCAGTACATGATTGCATGTCATAACGACAGCTGTAAGTTAGACTACTTCTATTTCACCAAGAGACCAGCTCTGTCAGAGGCTGCCAGAAGAACAGACAAACTTGCATCTTGGGAACCTAAAATTGTTCAGTTTGACATTCCTGGTCCTAAAGGGAGAAGATTGGAAAGACGGTTGTCCAGTAATGTGCATCGTGATTTGATTTTGATTTGGTGGCATCAGTCATGTGAAGAACCATGGCCATGGACCCCTCTGTCCTCAGAGAAGGAAAGAGCAAACATGATTGTGTTGTCTGTCACTGGCCCAGTGATTGATGTTTTGACTTACACGAAGACAGATTTAGCTCCCTTGCATGCTGCTTTCAGTACCATTCAGCCTCATAAAATCTACACTCTGGAGCAGACAACAACAGTAAAGAATAACACTACAGCACAGGCATGCATTTATGAAGTTGTACGAGGGAAGATACAGAGAGTAGCAGTGACAAATATTCCTCTAAAAAGCACTGTGGTATGTCAGTGCAGAAATCCTACTGAAGAAAAACTCTTGCTTGGTTGCAGTAACATGACTTTGGTTATGCATGATGAATACAAAAAGGTTCCTCAATATACAAGAGCTGCATTTGCTCCATCCATCATATCCTGGCACTCTAGAGGTGGCAGTGTGGTGTTTGTTGCCAGTTCAAGAGGTGACATTCAGATATTTGATAATGCACTTACACCTTTGAGAATACAACTTGTTTGTGAAGATCCAAGTTCAGAAAAATTTCTACCTCTTGGAAGATTTTTCAGAAGTCAGATGTTTCTGAAACAGCTGTGTTGGTGTCCACATGAAACAGGCAGTTTGACAAGTCATTCAGACTCTGTGTTTCTTTTGTTTGATAAGGGACCCCCTGTACTTATGTTATTCCACCTTGGCTTGATGGGAAGTGAGAGTCTTAGTCCATTACAGCTAGTGAGGCAGTATCTCAAACACAAGCAGGTAGACGAGGCTAATAGTTTGTTGTCAAGTCTGAACTGGGATACAGAAGGACAAATGTGCTATTCTTGTTTGTCAACAATCATCAACCATTTACTGAGAATGCCATTAAATGCTGAACGAGAGACCCAGCTGGAGGCAGCACTGGGGACATTTTATGCACCAAAGCCACCAATATCAGAGGTGACTATTCTAGAATACAGAGATCCTATCAGCCGTCTTGCCAGAAGATTTTTCCATTACCTTCTCAGATATGCTCGGTTTGACAAAGCTTTCCTGCTGTCAGTGGACATAGGAGCTAAAGACTTATTTATGGATATTCATTACATGGCTTTGGACAAAGGAGAAACTGCTTTAGCTGAAGTGGCCAAGAAAAAAGCAGAACAGCTTGACTTAGAGTCATTAGGCAAGTTTAGCTTAAAACGAGTCTATCATTTTGATGATGATTATGCAGGTGTGAAACAGGGGATAGAAGAAAATGTGCAGATTGAAATCCAGGATAGGCCAAACGAGCTTCCAGCATCTCGCAAGCATCCCTGGCAGACAAACTACTACAGCATGTGGACCCCTACAGGTCATAACAGTGATTATTTAAATCAGAATGGAGACCAAATGAACGATATTGGTTTTGATGACTATGCTGCAGCCTTGATGGATCAGCCTACAAGAACTGACAGCAGAAATTATGAAAGTGAGACCAAACCAGAAGAAGAAAAAGTCATGGCTGAAGCACATTCTGCAGTTGCTTTTTCTTTCACTGTGACTCCTGAGGGTGTCAACCTTGATCTCAATCATGAGGTGTTCAAGGCAATCTGGGAAAGTGGAATTTCATCATGGAAGAAACGCATTGGACGAATGAAAAATAATTTCAGAAATGGACTTTTTCCGGCATCTCCAAAGAGTTTTTTTCTCACATTGGCAGTTATTATGGGGTTCTATTATGGAGGCTTTGATCCATCATTTGGTCTGATACACTTCTTTCAAACCCATATGCTTGGTCTTGATGCAACCAACCCAACCATCAGTTTTGATATTAGCTGTGCTCTCTTTGCTGTTCTCATGTGGGTGATTGCAATTCTCTTCATCAAGTACAGCCTGAAGGCATTACTCACTTACCATGGTTGGATATATGAAGTAAGGGGACCCGCTTCACTCAAAACTAAGCTGTGGTTGGGTCTGGTACGCTTGTTTGGTGGGAGGAAACCTCTGCTAAACAGTTATCAAGCCTCTTTGCCAAAGCTGCCTGTCCCTTCTCTTGATCACACCATAACTAAGGAGTCCAGCATGATGTGTCTGCTTGACAGCTGTGGCTATACCTGTACAGATTCAGTTTGTTTAAACGATTGTGCTAATTTTCTTGAATCGATTCATCCCATCATGGAAGAGGGAAAGTACAAAAGAATGGAAAAACTGGCTTATGAATTTAGATACGGGATTGGCAAAAGGCTTCAGTGGTATCTTGTTCTCAAATCTTGGTGGGCAACCAACTATGTATCGGATTGGTGGGAAAGCTATGTATATCTGAAGGGAAGGTCACCTATCATGATCAACAGCAACTTTTATGGAATTGACTGTGTACTGGAAAAGCCTTATGGCTGTCAAGTAGCACGTGCTGCAAATATAATATATGCTGCCATTCAGTACAGACGTGAAATTGACAGAGAAGAACTGAAACCTCTTTTGTTGAACAAAATTGTTCCACTCTGCTCTGCCCAGTATGAAAGACAGTTTAACACGACACGTATTCCAGGAATTGATATTGACACGCTTGTTCATTTGAGCATTAGTAATCATATATCTGTCTACCACAAGGGTCGCTACTTCAAGGTGTACATCAAAAACAAAGGTCGCTATTTGACACCTGTTGAAATAGAGAGCGTCCTTCAAAAGATAGTAGATGACCAGTCCCCCCCAGCACCAGGTGAAGAACACCTAGCAGCCCTGACCGCTGGGGAACGTGTGCCCTGGGCCAAGGCACGGAAAGAATTTTTCTCTGCTGGCAAGAACAAGGCTTCACTCCAAGCTATTGAAAAAGCTGCCTTCTGTGTTTCTCTGGATGAAGAAAGTCATAACTATGATCCAAATGATCCAACTGCATTTGACAGATATGGAGCTAGTTTGTTGCATGGAAAAGGCCATGATCGGTGGTTTGACAAATCCTTTACCCTGGTGGTGTACAAAAATGGGAGAATTGGTTTCAATGCAGAACATTCCTGGGCTGATGCACCCATAATGGCACATATGTGGGAGTGTACGTTAAGTATGGAGTTTGAAGAGCTAGGGGGTGATGGGGCTATCATGTCTCGGTATTGGCAACAAATGATGGAAGAAATCAGAAAGCCTATTAGATATACTGAAGATGGTCACTGTACTGGAGAACTGTCAGATCAAGTACCAAATCCCATACGGTTGGAATGGGATATGCCTGCACCTTGCATACAGCAGATTGAAAACAGTCTGAGTGTTGCTCAGCAACTAATCAGTGACGTGGATCTTCACATTATGATGTACAATCACTATGGGAAAGGATTCATGAAGAAATGTAAAGTGAGTCCTGATGCATACATTCAGATGGCCATTCAGCTGACATACTACAGATCTGAAGGAAAGTTCTGCTTGACTTACGAGTCATCAATGACAAGACTGTTCCGAGAGGGCAGAACTGAAACTGTCCGATCCTGTACAGCAGACTCGTGTGATTTTGTCAGAGCGATGGAGGACAAGCAAATGACTAATGAAGAACGTATCAGGCTGCTGCGGAAGGCAGCAGACACACATCAAAGGTCATACAGGGAGGCAATGACGGGTCTGGGCATTGATCGACACTTGTTTTGTCTGTACGTTGTTGAGAAGTATCTGGGGCTGGATTCTCCCTTCTTGTCGGAAGTTCTCAGTGAGCCGTGGAGATTATCAACCAGTCAGACTCCCCATCAACAGGCACAGAAGATAGACATAGATAAATACCCAAACAGGATTTGTGGTGGTGGAGGATTTGGACCAGTTGCTGATGATGGTTATGGAGTGTCCTATATTGTTGCTGGTGAAAACACAGTCTTCTTTCATATCTCCTGCAAGAAATCATGTTCCACCACAAATGCAAATCAGTTTGGTGATAAACTTGTACAAGCCTTTGCTGATATGCAGAACATATTTGAAAGTTCTTAA

Transcript

CsqKR_Scaf3_9.32

AAAATACAAAAAAAATATATAAAAAATAAAAAACCAAAACAATACCAATAATGTCACGAACAAAATTTTTTCTAAGAGAGTGTTGTGTAAAGTAAACTAAAACTGCCCAATGGTTACCTGTCTGTGTGAAGTGTTCATCTGGTCACTAAAAAATCAGTATTTTATACCAGATGACACTATAGGCTGTCATGTCTACCATGATAAAGGAGAACAAGCACGTGATATGATTTGGTCACCAAGAAATAAACGTCCTGAGAAATTGCGTGATACACTGAAGGAAGTTGAGGAGTTAATGAGTCAATACAAATGTGTTCAAGTGTACTGGAGAAGTGGACTGGTTTTACAGTTGGTGTTGAGCAATTGCTGTGTAGTGACTTTCATACTGTCTACATGTTCAGGAGATATCCAAAAGATAATTCTCGATAAATCATTAGTTGGAAAAATTGCTGCAGAAACAGTATCTGATGTTTATCTTACTGACCAGTACATGATTGCATGTCATAACGACAGCTGTAAGTTAGACTACTTCTATTTCACCAAGAGACCAGCTCTGTCAGAGGCTGCCAGAAGAACAGACAAACTTGCATCTTGGGAACCTAAAATTGTTCAGTTTGACATTCCTGGTCCTAAAGGGAGAAGATTGGAAAGACGGTTGTCCAGTAATGTGCATCGTGATTTGATTTTGATTTGGTGGCATCAGTCATGTGAAGAACCATGGCCATGGACCCCTCTGTCCTCAGAGAAGGAAAGAGCAAACATGATTGTGTTGTCTGTCACTGGCCCAGTGATTGATGTTTTGACTTACACGAAGACAGATTTAGCTCCCTTGCATGCTGCTTTCAGTACCATTCAGCCTCATAAAATCTACACTCTGGAGCAGACAACAACAGTAAAGAATAACACTACAGCACAGGCATGCATTTATGAAGTTGTACGAGGGAAGATACAGAGAGTAGCAGTGACAAATATTCCTCTAAAAAGCACTGTGGTATGTCAGTGCAGAAATCCTACTGAAGAAAAACTCTTGCTTGGTTGCAGTAACATGACTTTGGTTATGCATGATGAATACAAAAAGGTTCCTCAATATACAAGAGCTGCATTTGCTCCATCCATCATATCCTGGCACTCTAGAGGTGGCAGTGTGGTGTTTGTTGCCAGTTCAAGAGGTGACATTCAGATATTTGATAATGCACTTACACCTTTGAGAATACAACTTGTTTGTGAAGATCCAAGTTCAGAAAAATTTCTACCTCTTGGAAGATTTTTCAGAAGTCAGATGTTTCTGAAACAGCTGTGTTGGTGTCCACATGAAACAGGCAGTTTGACAAGTCATTCAGACTCTGTGTTTCTTTTGTTTGATAAGGGACCCCCTGTACTTATGTTATTCCACCTTGGCTTGATGGGAAGTGAGAGTCTTAGTCCATTACAGCTAGTGAGGCAGTATCTCAAACACAAGCAGGTAGACGAGGCTAATAGTTTGTTGTCAAGTCTGAACTGGGATACAGAAGGACAAATGTGCTATTCTTGTTTGTCAACAATCATCAACCATTTACTGAGAATGCCATTAAATGCTGAACGAGAGACCCAGCTGGAGGCAGCACTGGGGACATTTTATGCACCAAAGCCACCAATATCAGAGGTGACTATTCTAGAATACAGAGATCCTATCAGCCGTCTTGCCAGAAGATTTTTCCATTACCTTCTCAGATATGCTCGGTTTGACAAAGCTTTCCTGCTGTCAGTGGACATAGGAGCTAAAGACTTATTTATGGATATTCATTACATGGCTTTGGACAAAGGAGAAACTGCTTTAGCTGAAGTGGCCAAGAAAAAAGCAGAACAGCTTGACTTAGAGTCATTAGGCAAGTTTAGCTTAAAACGAGTCTATCATTTTGATGATGATTATGCAGGTGTGAAACAGGGGATAGAAGAAAATGTGCAGATTGAAATCCAGGATAGGCCAAACGAGCTTCCAGCATCTCGCAAGCATCCCTGGCAGACAAACTACTACAGCATGTGGACCCCTACAGGTCATAACAGTGATTATTTAAATCAGAATGGAGACCAAATGAACGATATTGGTTTTGATGACTATGCTGCAGCCTTGATGGATCAGCCTACAAGAACTGACAGCAGAAATTATGAAAGTGAGACCAAACCAGAAGAAGAAAAAGTCATGGCTGAAGCACATTCTGCAGTTGCTTTTTCTTTCACTGTGACTCCTGAGGGTGTCAACCTTGATCTCAATCATGAGGTGTTCAAGGCAATCTGGGAAAGTGGAATTTCATCATGGAAGAAACGCATTGGACGAATGAAAAATAATTTCAGAAATGGACTTTTTCCGGCATCTCCAAAGAGTTTTTTTCTCACATTGGCAGTTATTATGGGGTTCTATTATGGAGGCTTTGATCCATCATTTGGTCTGATACACTTCTTTCAAACCCATATGCTTGGTCTTGATGCAACCAACCCAACCATCAGTTTTGATATTAGCTGTGCTCTCTTTGCTGTTCTCATGTGGGTGATTGCAATTCTCTTCATCAAGTACAGCCTGAAGGCATTACTCACTTACCATGGTTGGATATATGAAGTAAGGGGACCCGCTTCACTCAAAACTAAGCTGTGGTTGGGTCTGGTACGCTTGTTTGGTGGGAGGAAACCTCTGCTAAACAGTTATCAAGCCTCTTTGCCAAAGCTGCCTGTCCCTTCTCTTGATCACACCATAACTAAGGAGTCCAGCATGATGTGTCTGCTTGACAGCTGTGGCTATACCTGTACAGATTCAGTTTGTTTAAACGATTGTGCTAATTTTCTTGAATCGATTCATCCCATCATGGAAGAGGGAAAGTACAAAAGAATGGAAAAACTGGCTTATGAATTTAGATACGGGATTGGCAAAAGGCTTCAGTGGTATCTTGTTCTCAAATCTTGGTGGGCAACCAACTATGTATCGGATTGGTGGGAAAGCTATGTATATCTGAAGGGAAGGTCACCTATCATGATCAACAGCAACTTTTATGGAATTGACTGTGTACTGGAAAAGCCTTATGGCTGTCAAGTAGCACGTGCTGCAAATATAATATATGCTGCCATTCAGTACAGACGTGAAATTGACAGAGAAGAACTGAAACCTCTTTTGTTGAACAAAATTGTTCCACTCTGCTCTGCCCAGTATGAAAGACAGTTTAACACGACACGTATTCCAGGAATTGATATTGACACGCTTGTTCATTTGAGCATTAGTAATCATATATCTGTCTACCACAAGGGTCGCTACTTCAAGGTGTACATCAAAAACAAAGGTCGCTATTTGACACCTGTTGAAATAGAGAGCGTCCTTCAAAAGATAGTAGATGACCAGTCCCCCCCAGCACCAGGTGAAGAACACCTAGCAGCCCTGACCGCTGGGGAACGTGTGCCCTGGGCCAAGGCACGGAAAGAATTTTTCTCTGCTGGCAAGAACAAGGCTTCACTCCAAGCTATTGAAAAAGCTGCCTTCTGTGTTTCTCTGGATGAAGAAAGTCATAACTATGATCCAAATGATCCAACTGCATTTGACAGATATGGAGCTAGTTTGTTGCATGGAAAAGGCCATGATCGGTGGTTTGACAAATCCTTTACCCTGGTGGTGTACAAAAATGGGAGAATTGGTTTCAATGCAGAACATTCCTGGGCTGATGCACCCATAATGGCACATATGTGGGAGTGTACGTTAAGTATGGAGTTTGAAGAGCTAGGGGGTGATGGGGCTATCATGTCTCGGTATTGGCAACAAATGATGGAAGAAATCAGAAAGCCTATTAGATATACTGAAGATGGTCACTGTACTGGAGAACTGTCAGATCAAGTACCAAATCCCATACGGTTGGAATGGGATATGCCTGCACCTTGCATACAGCAGATTGAAAACAGTCTGAGTGTTGCTCAGCAACTAATCAGTGACGTGGATCTTCACATTATGATGTACAATCACTATGGGAAAGGATTCATGAAGAAATGTAAAGTGAGTCCTGATGCATACATTCAGATGGCCATTCAGCTGACATACTACAGATCTGAAGGAAAGTTCTGCTTGACTTACGAGTCATCAATGACAAGACTGTTCCGAGAGGGCAGAACTGAAACTGTCCGATCCTGTACAGCAGACTCGTGTGATTTTGTCAGAGCGATGGAGGACAAGCAAATGACTAATGAAGAACGTATCAGGCTGCTGCGGAAGGCAGCAGACACACATCAAAGGTCATACAGGGAGGCAATGACGGGTCTGGGCATTGATCGACACTTGTTTTGTCTGTACGTTGTTGAGAAGTATCTGGGGCTGGATTCTCCCTTCTTGTCGGAAGTTCTCAGTGAGCCGTGGAGATTATCAACCAGTCAGACTCCCCATCAACAGGCACAGAAGATAGACATAGATAAATACCCAAACAGGATTTGTGGTGGTGGAGGATTTGGACCAGTTGCTGATGATGGTTATGGAGTGTCCTATATTGTTGCTGGTGAAAACACAGTCTTCTTTCATATCTCCTGCAAGAAATCATGTTCCACCACAAATGCAAATCAGTTTGGTGATAAACTTGTACAAGCCTTTGCTGATATGCAGAACATATTTGAAAGTTCTTAATGAAAAAGAAGAATGATGTTTAGTCTTGACATACTGTCATATTTCAGTTACAGACCATTTCTAGACTGCATTGTCCTAGGAGACAAAAACATAATAAATTATATACATATATATATTTTTCAGGGTTAGAATTTAGCTCAGTGGAAATACGACTGTGACATTTTAAAACCACCTAAACTAAACTTGTAACCACTTGACTTAATAATGCAACCACAATCACCCCTTTTCTAACAGAATAGGACCTACCCCCCTTCACCTGTAACTTAATCTCAGCCCATTGGAACATCTAACAACTACAATTTATCTATCACTTCTCAGTAGTTCTTATTGTGAAATTAGCAGACTATGTTTAATGATACTCAGATATGTGTGATTTTATTTATTTATTAATTTTTTTTTTTTAACAATATTATACATAATTCTTGTTTGTCTATTTATTTATTTATTTATTTTTTTAATATTGTTGAACAATACTGATCTGAATATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00755	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan
PF11768	Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	Repeat	Interproscan
PF16484	CPT_N	Carnitine O-palmitoyltransferase N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000542	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR023213	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR024511	Family	WD repeat-containing and planar cell polarity effector protein Fritz	Interproscan
IPR032476	Domain	Carnitine O-palmitoyltransferase, N-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039551	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR042231	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22589	CARNITINE O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004095	Molecular Function	carnitine O-palmitoyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0009437	Biological Process	carnitine metabolic process	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf3_9.32 global RNA-seq network