Gene detail

Detailed information of CsqKR_Scaf38_14.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf38_14.7	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	chr5	19352661	19362303	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf38_14.7

GTCTGTATTTCAGCAAACATTGCTCTGGAGAATGTCCTTGCTGCATTGTTACTGTTAGATCCAAAGAAGTTGATTGAAGCCCTGAAGTCACCTCATCTTGGGTTGAAAAACATCAACAGCGACAACGTTGATTATTACATACAGAAACTGAAAGAATTCAGAGAAATAAAGAAGAACAACAACAGTGGAGAGGAGGTCATGTTAGAGAAAGAAGAACTGCAACAAGCAATAAACCAGGCCAATCTAGAGGCTGATACAGAATATCAAAAGGCTAAAGCTGTGGCTGCTATAAACTCTGCAATAGAAGAGGGTGACAGTGTACAGCTGATGAAGAACATACAGAACCCAGCCTCACAGCTTCCACATGTGTTTGACTTTGCTGGTATCCTCTACCTGAAAGAGTTCCAGAGCATCAGATCAGAAAAGAAGGCTGATTTGGATTATGATGAACTGTTTGCATCCCTGGCAGTTCTGAATGCTGTTGCTGCTATCAACGAGGCTATCGACACAGCAAACCCACTGAACGTGTACAACTCCCTCTCCCTGCCTGATGCACACATACCTGACCTGGATGAGCAGAACATGGAGAAATATTACGAAACACTGGCAGAAGCAAAAGAAGTCAAGAGAGAGGAAGGTAATGATCTGCTGACTCATGGTGAGATAACACAGAGTGTGGATAACGTACACAAACAAGTACAGGAAGAACACGAACGTATTCTGGCTATAGGTGTGATTAACGAAGCTATAGACAAGGGAGATGAGAACCAGACACTGGAAGCTCTGTTGATGCCTGTGGCCAGACTTCATGATGTGGACAGAAAACAAGGCTACCACTACCAGGTGTTGCTTGCTAAAGAGAAAACTAAAAAAGCAGAGACTACTAATGATGACGAAGCGGTGCTGTGGTTGGAGGAGATACAGAACACTGTGGAGAAGGCAAACAATGATGCCGAAGTTGGACTGAAACTTTCCAAAGGCGTGGCTGCAGCAAATGTTGCAATAGATAGCAGTGACACTGAGGCCCTGTCACAGGCTCTGTCAAACAGTGACATTGGTCTCCATAGTTACACACCTGACTGTGTCCCTTCTTACCTGGACAAACTGAAAGAACTGAAGCAGTTCAAATCTGAGTCAGGGGAATGCGGAAGTGGGTGGATGATGAACAGACTGAAGGATGGATCCAAGTTTTTCTACAACATCCACACTGGAGAGTACCTGTGGTCGCGACAAGATGGCGTCATCAAAGACCACGCCTTGTTAACGAAGGAGGAAATCCAGAAATCCATAAGCGAAGTGACGGCAGCCTATGACCGAGAGTTGCTGTTGAAGGCAAACGAGGGAAACATAATAAAGGGGCAAGCTTTGATCAGAGGTTACCTTCAGAGAAAAACTTACAAAAAGAGACTGCAGTTTATAAAAACACAGTTACCTGCCATTGTAAAGATTCAGTCTTGCTGGCGAGGATACAAACAAAGGAAGCAGTACAAGGAGAGGCTGAATTTCCTCAACAGTCAGGAGAAAACAGCCATCAAGCTTCAGTCCTATTTTCGAATGTGGAGAGAAAGAAAGAAGTACAGAAACAGACTCAAGTATTTCAAAGATAATGAGGATGCTATCATCAAAATTCAGGCTCTGTTTAGATCAAATCTAGCAAAACAAGATTACAAAGCCCTCATGATGGATGAGAACCCACCTCTTTCAGTGGTCAGGAAGTTTGTGCACTTGCTGGATGCCAGTGACAATGACTATGCTGAGGAACTGGAACTTCAGAAGTTACGTCAGAATGTGGTGACAGAGATACGGTCAAACCAACAATTGGAACAAGATCTTGACCAGATGGACATTAAGATTGGACTGCTCATCAAAAACAGAATCACTCTCCAAGATGTTGTGACGCACAACAAGAAACTTACAAAGCGTTCGGACACTTCGAGCAACCTCCGAGGTTTAAAAGCCCTGAGCAAAGAGAGTCACGAGCGTCTGCTTCACTACCAACACCTGTTTTACCTGCTGCAAACGAACCCCACTTACCTGGCCAAGCTGATCTTCGAGATGCCGCAGAGCAAAACGACCAAGTTCATGGAGTCTGTCATCTACTCTCTCTTCAACTACGGAGCCAACCAGCGAGAAGAGTACCTCCTGCTGAAGCTGTTTAAGACTGCCCTGGAGGAGGAGATTGCGTATGTATAG

Transcript

CsqKR_Scaf38_14.7

CTGTCTGTATTTCAGCAAACATTGCTCTGGAGAATGTCCTTGCTGCATTGTTACTGTTAGATCCAAAGAAGTTGATTGAAGCCCTGAAGTCACCTCATCTTGGGTTGAAAAACATCAACAGCGACAACGTTGATTATTACATACAGAAACTGAAAGAATTCAGAGAAATAAAGAAGAACAACAACAGTGGAGAGGAGGTCATGTTAGAGAAAGAAGAACTGCAACAAGCAATAAACCAGGCCAATCTAGAGGCTGATACAGAATATCAAAAGGCTAAAGCTGTGGCTGCTATAAACTCTGCAATAGAAGAGGGTGACAGTGTACAGCTGATGAAGAACATACAGAACCCAGCCTCACAGCTTCCACATGTGTTTGACTTTGCTGGTATCCTCTACCTGAAAGAGTTCCAGAGCATCAGATCAGAAAAGAAGGCTGATTTGGATTATGATGAACTGTTTGCATCCCTGGCAGTTCTGAATGCTGTTGCTGCTATCAACGAGGCTATCGACACAGCAAACCCACTGAACGTGTACAACTCCCTCTCCCTGCCTGATGCACACATACCTGACCTGGATGAGCAGAACATGGAGAAATATTACGAAACACTGGCAGAAGCAAAAGAAGTCAAGAGAGAGGAAGGTAATGATCTGCTGACTCATGGTGAGATAACACAGAGTGTGGATAACGTACACAAACAAGTACAGGAAGAACACGAACGTATTCTGGCTATAGGTGTGATTAACGAAGCTATAGACAAGGGAGATGAGAACCAGACACTGGAAGCTCTGTTGATGCCTGTGGCCAGACTTCATGATGTGGACAGAAAACAAGGCTACCACTACCAGGTGTTGCTTGCTAAAGAGAAAACTAAAAAAGCAGAGACTACTAATGATGACGAAGCGGTGCTGTGGTTGGAGGAGATACAGAACACTGTGGAGAAGGCAAACAATGATGCCGAAGTTGGACTGAAACTTTCCAAAGGCGTGGCTGCAGCAAATGTTGCAATAGATAGCAGTGACACTGAGGCCCTGTCACAGGCTCTGTCAAACAGTGACATTGGTCTCCATAGTTACACACCTGACTGTGTCCCTTCTTACCTGGACAAACTGAAAGAACTGAAGCAGTTCAAATCTGAGTCAGGGGAATGCGGAAGTGGGTGGATGATGAACAGACTGAAGGATGGATCCAAGTTTTTCTACAACATCCACACTGGAGAGTACCTGTGGTCGCGACAAGATGGCGTCATCAAAGACCACGCCTTGTTAACGAAGGAGGAAATCCAGAAATCCATAAGCGAAGTGACGGCAGCCTATGACCGAGAGTTGCTGTTGAAGGCAAACGAGGGAAACATAATAAAGGGGCAAGCTTTGATCAGAGGTTACCTTCAGAGAAAAACTTACAAAAAGAGACTGCAGTTTATAAAAACACAGTTACCTGCCATTGTAAAGATTCAGTCTTGCTGGCGAGGATACAAACAAAGGAAGCAGTACAAGGAGAGGCTGAATTTCCTCAACAGTCAGGAGAAAACAGCCATCAAGCTTCAGTCCTATTTTCGAATGTGGAGAGAAAGAAAGAAGTACAGAAACAGACTCAAGTATTTCAAAGATAATGAGGATGCTATCATCAAAATTCAGGCTCTGTTTAGATCAAATCTAGCAAAACAAGATTACAAAGCCCTCATGATGGATGAGAACCCACCTCTTTCAGTGGTCAGGAAGTTTGTGCACTTGCTGGATGCCAGTGACAATGACTATGCTGAGGAACTGGAACTTCAGAAGTTACGTCAGAATGTGGTGACAGAGATACGGTCAAACCAACAATTGGAACAAGATCTTGACCAGATGGACATTAAGATTGGACTGCTCATCAAAAACAGAATCACTCTCCAAGATGTTGTGACGCACAACAAGAAACTTACAAAGCGTTCGGACACTTCGAGCAACCTCCGAGGTTTAAAAGCCCTGAGCAAAGAGAGTCACGAGCGTCTGCTTCACTACCAACACCTGTTTTACCTGCTGCAAACGAACCCCACTTACCTGGCCAAGCTGATCTTCGAGATGCCGCAGAGCAAAACGACCAAGTTCATGGAGTCTGTCATCTACTCTCTCTTCAACTACGGAGCCAACCAGCGAGAAGAGTACCTCCTGCTGAAGCTGTTTAAGACTGCCCTGGAGGAGGAGATTGCGTATGTATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:1903479	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf38_14.7 global RNA-seq network