Gene detail

Detailed information of CsqKR_Scaf366_16.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf366_16.15	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	chr1	46629961	46648777	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf366_16.15

ATGGCAGCCATGTTTTCAATGCGTGTGGTAACTACTGACCATTACTTGGCTGACCCGATTCCTGGTCTTGACGTCACGCTGTCTGAATTCAGAGGTACTGAAGTGAAGAAAGTTCCAATCTTGCGCATTTTCGGCTCTACTCCAGCAGGTCAGAAGACGTGTATGCACATACATGGAGTTTTCCCGTACCTGTACGTTCCGTACGATGGCACTGACCCATGGGACCGCTACCTGCGACAGTTTGCTGCGAGTCTCGACAAAGCCATAAACATCGCCAGCAACAACAGTTCAAACCCACAACATGTACACAAACTGTCGCTCGTCACTGGAATCCCTATGTATGGTTACCATGACAAAGAACAGGAATTTATCAAGATCTACCTCTATAATCCATCTTCCATAAGAAAAGCGGCTGATCTTCTTTTGGCAGGTGCTGTAATGAGTAAACCTTTCCAGCCTTACGAAGCTCATATCCCTTACCAGCTACAGCTCTTCATTGATTTTAACTTGTATGGAATGAATCTAATCAATGCTGCAGCAGTGAAGTTTAGAAGAAAAAGGAATGATAAGGAAAAAGTCAAATCTGTCACAACCACATCCACATCGTTCACTACATCACCTGGTGATGGAGGTGGGAATAAACTTAGTATGATGAAGTGGAATGACGACACCATTCCTGTGGACCTGTACCTGCCTGAGTCTGTTGAACGCCAGAGTTCATCAGAACTTGAAGTGGACATTGTGGCTGCCGATATTCTCAACAGGCTGGATGTAGACAGTAATATAGGAGCCAATCCAGGGCTGGCAGCTTTGTGGGAGGACGAAAGACAGAGGCGAAGGGATCTGGGTGAGGATTCACACATCACCCCACCCGAGTCACAAGATCACAGTGCTGTTACATCATCAGAAAGTGAAAAACTTCATCTCCAGCGACTGCACGAAATTATTGAACAGCTAAGGCCGTATATCGACAGTCAGTCAGAGCCATCTGATGCAGACACTTCACAGGGGGAGACAACTCAAGCTGACGTCCCTGCTACCCCTGCCTCAATGGTAGATTTCCATCAGTCACAGAGTACAGACTCCATGATGTCACAGGATACTCTGGAGAACGACGATGACGATGCTGTTGTGAGTCTGGAAACCATACAGCGAGTGATGTCCTTTAGCCAGAGTTTCTCTCAGCCTTCCTCAGAAAACTCTGTCACTGAGGCTCTGGCTGCTCTTGCACAAGAGTCTTCACCTGTGTCATCTCAGCTGACGTCGTCACAGTTATCTGCCCTTGAAGAGAAGGACAGTGTCATAGCCGACATTGTTCCTGATGATGATCTGCTTCAGAAGGATGACGAGGAGACTTTGGAGATGTCACAGAGGGTGTGGGATGCGGGCAATGATGATGATGATGAAGAAGGTGTTGATGAAGTGGAGAAAGCAACAGAACCAGGCACTTCTGCTGCTGTTGAACATGACCTGGAGGGAATGGATGACACCTGGGAATCACCACTGGAAGTGGATGAAGATGTGGATCCAATGGATGATGATGTTATTCCACAACTAGATGGCGCCTCTGACAAGAAACCAGAATCCAGCAGACAGAAGAAGCGTGCACAGGGGACTAGTACACATAGAGAATTAGAAGGTTCCAGTTACCAGGGTTCAAATCCTTACAGAGGTGCTTACACAGCACCAGCCCCTGCACCTGTTCAGCCCCTGGCAAGCACAGATCCTGGTTTCGGTCAGCCGTGGAACCACGATGTCCAGAGTCCGCCCATCCTGGGCAGTTCTGTCCAGAGGACGTCCTCCATTCACGGCAGTCAGCAGCAGCACTACCAGAACTGGCAGCACAACGCCTGGCACCAGCAGACTGGAGTGTCTGAGAGCAGAGTGAGACACGACAGCTTCCAGTCTTTCTACAACCATCCTCAGTCGTCCACAGAGTCCAACTACAGATACCCTTCTTCCTACTCCTCCTTACACGACCAGTTCAGCAGTCCCGAGTCGCCGAGATACGACATCCATTCCCATTATGACGCTGCGCGGTTCCCAGGCAGCCAGAACCTGGCTCCTCAAGACTCCTACCAGCACATGATGCAGTACGGAAACAGGAGCATGACGAATGCGAGCCAGTACGGCAGTTCCAGTTTCATTTCCAGTGACAACTCTTCGAGTCAGTGCAGCACCACCACGACGATGATGAATCTGGCAAACAATCCAGACGGTTCCTTGATGACCGAAACCGAACCTTTCGATCAGCTGGTCAACACACTGAGCTCTCCTCCTCCTCTGCCACACCCAGACCTGACCACCACGGTGACCGATCTGGACACAATGGAGACGTGTATTAGTCCCCCCTGCAGCAGGACCATGTCGGGCCTGAGCAGCAGTCAGCAGGACTTGTTCAGCAGTCCTCCTCCACAGAAAGCAGACAAACACAGATCGCTGTCGCTGGATGAAAGCAGTCATTCTGAGTGCCTTATGGACCTGTCTGATTGCCGAGGCTACCTCCCCAAGCATTACAAGTCTGACAACGTTTGTTCTGACTTGGACATGAGCTCTTCATTTTCTCATTCACCTTTAACCATGAACAAACAGACGCATTACCCTTCCTCCGCGATGTCGGGACTTTACAACCTTGTCTCCAACATCAGCCACGACACCATGTACGAAGTGAAAAACAAAGACGTTGGTGAAAGGCGAAGTGCTTTGAAACTCTCTCTTAAACGATCGCGTTCAATGTCTTCTACGGCTTCTGAAAACAATATGCAGTGTTCAGGTGGCTGGATTATACAGACTGACCCAAAGACCAGCTTGACTTCTTCTACCTCAGAAACCATCATGCCTGTGTCTACCAAAAGGTCGTTAACTCGTGCTTTCACTAGAACTGCTAGCCACCAACCTGACAAGCCAAAGATTGGAAGGCCGAGGAACAAGACGAGATCAAGATCAAAAAGCACTGGTTCACAGTTGGGGACAAAACAGTCAACTTACACATACGCGTTCCATGTGCCAACTCCTGTTTTCAAGAGACTCAAGTTCCACCAGAAAAACATTCCTGACAAAGTCAAAGTTGTCAGGATGCATCCTAAAGATGCCAGGAAGTACAGTCTACTTAAAATTGGAAGAGAAGTAGTGGAAGTAGAGAAGATGTCGGTTAAGGATATTTTGAAAAAACGAAACGAACAATCTGTGTCTTCTGTGATGTCATCTTTTCATTATTCTCCTGTAGCCAAGATTTTCAGTGATGGTTCATCATCATCATCATCATCCATAGCTTCTGGATCAGACATTGGAAGCTGCTCATCTGGAGTGAAAAAGCAAGAGAGAGAGTACCTGTCATCACCTCTGTCGTGTTCTTCTGGTAGTTTCACTGACTACGCTTCCCATTTAACTAAGACACATACCAGTGACTCACCTTCGAAAACCTCAGGGAGTGTCATAGCAGCTTTGTTAATGAGCAGTGATGAAAACATACCACAGCATTCTGTATTTAAGTCTCAGCCAGCATTTCGTAATACCACTCCAGGGTCAAAAAACGAAGCATCAAACGTAGACCAAAAAATGAAATATGTAGACTCAGCAAAAGATGATTTCACGGACTACATCAAAAGAACAGCAGCTTCATTAGAAATTGCAGAGAAACCGTCAAAACTGGAGCAGGTCATGGAGAAAACAATAGAAGCCATAGCTAATCCAGTACAAATTGGATCTGAAAGCAGAATGGAAACTGAGAGTGTGCCTGTGAGCTCTAGTCCTGAAAAAACGGGAATGAAAAGATCTGATTCTTTTTCTGCAGCTTTTGAACAGTTTATTATGTCCGCTAAGCCACCAGAACGTGGATACGTGGAAGAGACAACCAGCAAAATGAGTAAAGATGAAAACAGTAAAAATGTAGAAAAATGTGTGACTGAGGCTGATGATAGTTTGAATAAAACAAATGTGTCTGGCAAAAGCCTGTTTGGTACTTGTACAGACGACTCTGGATGTTGTGAAACAAACGGTAATAAATCCATAAAACCAAAAAACTTGTCTGACACAAAGTCAGAATTGTTGAGTTTGCAAGCTGTTAATAAAGACCACATACCTGTAGAAAAAACCACATCAGAGAAAACCTCATCCTTTCCCATATCTTCTGAGACCCTGAAAGACTGCCAGGATGATTCAAACTGTTGTAATGAAACATTCTGTGGTGCCAGTCATGACAGTAAATTAAATACTTACTCAGGTCAGGATGTGTTAAGCAAAGAGACCCATGACCTGGACAATCCTGTACATTCTCACGTCCATGATGAAGTTTCACTTAGTCCTTGGATTCCTAATCAGGATGTTTCAGTCAGTGGTTGTACTTCGTATTCATTTACGCAGCCACAGTGTCAAACAAGTTTCACACAGGAAAAACTCAGTTCAGATGTACCATGTAGTGGTACGAAAGCATCTGCTGTTTTTAACCTCAAAACTAGCTCCTACAAAAGTGGTTCAGCAGAGTGTACCGATTCAATCCACTGTGGAGAGAATAACAGCAATTCATCCAGTGGGTCTGATGTTTCTGAGCAGGAGGACGTGCCTGTCAGTTACAGCCCTGAAAACAGCCAGGATGTGTTAGGTTTAGACAGGAGTCAAAAAAAACACGGTCCAGTGAGGCAGCTAGATGAGTTTAAACACAGCGACAATGCAGTGGATATTGTGATTGGTAGTGGGAAAGTTGGGAGTCAGAGTGCAGTGTTAAATATGTCGCAAGACGAAGGTAGTAATTCAGCATGCGGAGTAAACCAAAACAAAACATCAAAGCTAGATTCCGAGTTTGGAGAATCTGAAAAGGAACCTCTGAGTGAAGCAGAGTCTACGATGTCCAATGCAAGGTCTAGGACATCCTCCAGAACCAGCTCCAGAAAAGAATCATCAGACAGCAATGAGTGTATGTTTGAGGATGTGTTCAGCAAGCAGAGTTACGGTAAGAAACAAATTACAAAAAGTGTGGACACAGTTTCTGAATGCTCGGACAGCAATGTCGATCTTCACGACATGTACTTTGACAGCTACACATCAGAAATCCGAAGAAAACGAACTGCTGCAAATTACTCCCCAAACGCTTTTGCTCACCTGTTCAAGGTAAACAAGCACAGCGAGAGCAAACCACCAGTTAAAAAAGTGTCAACGAGAGGAAAGAGAAAGAAAAACAAACAGAAGTTAATACCAGGAGTGCACTACATTATTATAGGAAAGTTCAAAGGCTATAAGTCTATGGGAGTCAGGCTGCAGAAACTGAAAATGGATGTCGGCGAAACTGTCAATGTGTGTGACTATTTGGAAAAGCACAGGGAAGAGAAGGAGTACATGAGAAAGGCACAGCTGAATGAGCTGCAGAATTTTGGAGATCAGAGTGTGGCACTGATTGAGAACCACTTGTCTGATGACAATTCACTGCACGAGATGATGGACGAACACTCACTGGAAGCTGTGGATGGTGAGGAGTTTGTCAGCAGATCTCTGAACAATCCTGTGGAAACCTTAGACCAGAACAGTCTGGATTGCTCATCAGCACTGACCAGTGAATCCGATTGCCAAGAGGTGAATTCAGCCTGCGACATAATCAAAGATGCAGGTGGTGCATCTTCCAGTTACCTGTTGGAACATCAGGTAGTAAAAGAAGGTTCTCACACTGATGTGTTTGATGACCAGACAGCAGAGTCAGACAACAAGTCCTTGTCATTTAAAAACGAACGCCTGAAGACTGATGAAGATTTCAAAACCAAAGAGTCTTCTTTCACTCGGAATGCATCTTCTGAAGAGATGGATACAAATATAGAAAAATTCCGTGCACTGACTAACAAAGAGGCGTCCAAGAAGAACGACAGACACAAAGATCTGGGCCGAGTGGAGCTGACGACCACAATAGACAAAAAGATCTTCCCCAGTTCGTACCAGACCGCAGAGAAGATTGAGATGTTTTCCAGAGACGTGGAATCCGACTCTGCTCTCGCCACAGGCAGCACGTCATTCATGTGCGGAGACCACTCCGAGTGCTTCGACTCGAGCAACTCCAACGACTCCAACTCCAACTTCAGCTGTTTCAAAAGTAAATCCGACTCGCAGCAGGACAGCAGCACGCAGAAGGACTCGAATCACACCAACGGCAGCAGTGACAGCAAACACGGGAAGAAAACACTGAAGAAGAAGCTGACGCCAAATCAGAAACTTGGTGTGGCTTTCCTGTCAACACGCCGCAAGAAGAAAGGAAATAAAGAGGGTGGAAAGCTGATGAACAGCCTGTCACTGCTGCACCAGGCTACGATTGAGAGTCTTGTGGACAAAAGTTCAGAGTTGATATCGGATTCCAGCATGGCCTCGGACGTTTCTAAAACGTCGGGGAAAGGGGATAATTCGGGAAGAATGGTCTTTTCAGGACGAAAACCACAGAAACAACTCGACAGATCTACTCCTCCTCAGCTTTCTAACTCTTCTGCGAAAAGCGGTTGTGCTGCTTTTAAGAAGAACGGCATTCAGAACAATGTGGAGTCTATATACGAAACACCTCTTTCGAGTGTGGAGAACCAGAAGGATATATCAGAGTTCAGATCTCTGAGGAGCACAGACTGTTCAGAGGTGCTGGCCAGTTTAAGGAACACAGGAAACGAAAATGATTTTTTGAAAAGCAAACCAGAAGTTGTTACTCCACCTTCAAAAACGGCAGTGGTAAAATTGTCTCCCTTGTTGTTGTCAGACATTTCGAACATTAATGCACAGAGGAAAGAAACAAGTTCGAAACTGTCCGCGATGGACACAAAATGTTCTGATTCCAGTGAGAATCACGATGCTAAAGAGAAAGAATCTAACATCGCTGAGAACGACATTAGTCTGAAGGACATAAAACAAAAACCAGACACTTGTTATGATGGAAGCAATTTATCACCGAGAGAGAATCTGGAAAGCAGCTTGTCTGAAAAAGATGCACATTCTTACAGCAAGAAGACTGGCTCCAGTACAGACCTGAACTGGACACCAGTGACTGACTGTATCCAATCAGATCAGCTCTTTGATCCTTACATCAACCCAATCAAAGACCCACAGTATGAAGACATCTCTTCTGATGAGGATGGCAATTCAGATCCAGCAGATGCTGATGGTGGTGGTGGTGGTAAAACTAAAGCAAACACATCCTCAAAGACCCCTACCCCATCACAGCCCTCATCTTCCACAGTTCAGATGGATACAGCACCTGGTGAACATGAACCAGCACCAGAAGATGATGCACAGAGGTCTGCACCACAAGGAAATCGGTCTGTAGGGTCTAGAGGTGGTGCTGAAAAAATTGTCATTTGTCCTCGAGTACCTCCACCTTCTAGAGACTTGGTGTGCCTCACAGCTGCTGCCCATGGACTGGGGACTGTCCAGAACAAGAAAGCTTTCTGTAGTAACCCTGCCGACATGCCAGAAAACAGAAGACTGCTGGATGGACCACAATCCAGGCTTCAGTCTGCGCTGGTGAAGGACCTTCCAGAATTCAAATCCAGCTCGTCGGGAACTCTGTTGTCATGGAGACAGCGATTCGTTGCTAACAACCGCATCTTTTCCTCTCAGACAAACATTGAACCACTGTGGGAGAAACTGCAGAAGGATCCCGAATTTAAATATGTGTTAAGTGAAGACAGGCACTGTGTTCTCACTCCTTGCAGACCCCCACCGTGTAAGAAAAAGTCCTCTCCTGGCTGA

Transcript

CsqKR_Scaf366_16.15

Protein

CsqKR_Scaf366_16.15

MAAMFSMRVVTTDHYLADPIPGLDVTLSEFRGTEVKKVPILRIFGSTPAGQKTCMHIHGVFPYLYVPYDGTDPWDRYLRQFAASLDKAINIASNNSSNPQHVHKLSLVTGIPMYGYHDKEQEFIKIYLYNPSSIRKAADLLLAGAVMSKPFQPYEAHIPYQLQLFIDFNLYGMNLINAAAVKFRRKRNDKEKVKSVTTTSTSFTTSPGDGGGNKLSMMKWNDDTIPVDLYLPESVERQSSSELEVDIVAADILNRLDVDSNIGANPGLAALWEDERQRRRDLGEDSHITPPESQDHSAVTSSESEKLHLQRLHEIIEQLRPYIDSQSEPSDADTSQGETTQADVPATPASMVDFHQSQSTDSMMSQDTLENDDDDAVVSLETIQRVMSFSQSFSQPSSENSVTEALAALAQESSPVSSQLTSSQLSALEEKDSVIADIVPDDDLLQKDDEETLEMSQRVWDAGNDDDDEEGVDEVEKATEPGTSAAVEHDLEGMDDTWESPLEVDEDVDPMDDDVIPQLDGASDKKPESSRQKKRAQGTSTHRELEGSSYQGSNPYRGAYTAPAPAPVQPLASTDPGFGQPWNHDVQSPPILGSSVQRTSSIHGSQQQHYQNWQHNAWHQQTGVSESRVRHDSFQSFYNHPQSSTESNYRYPSSYSSLHDQFSSPESPRYDIHSHYDAARFPGSQNLAPQDSYQHMMQYGNRSMTNASQYGSSSFISSDNSSSQCSTTTTMMNLANNPDGSLMTETEPFDQLVNTLSSPPPLPHPDLTTTVTDLDTMETCISPPCSRTMSGLSSSQQDLFSSPPPQKADKHRSLSLDESSHSECLMDLSDCRGYLPKHYKSDNVCSDLDMSSSFSHSPLTMNKQTHYPSSAMSGLYNLVSNISHDTMYEVKNKDVGERRSALKLSLKRSRSMSSTASENNMQCSGGWIIQTDPKTSLTSSTSETIMPVSTKRSLTRAFTRTASHQPDKPKIGRPRNKTRSRSKSTGSQLGTKQSTYTYAFHVPTPVFKRLKFHQKNIPDKVKVVRMHPKDARKYSLLKIGREVVEVEKMSVKDILKKRNEQSVSSVMSSFHYSPVAKIFSDGSSSSSSSIASGSDIGSCSSGVKKQEREYLSSPLSCSSGSFTDYASHLTKTHTSDSPSKTSGSVIAALLMSSDENIPQHSVFKSQPAFRNTTPGSKNEASNVDQKMKYVDSAKDDFTDYIKRTAASLEIAEKPSKLEQVMEKTIEAIANPVQIGSESRMETESVPVSSSPEKTGMKRSDSFSAAFEQFIMSAKPPERGYVEETTSKMSKDENSKNVEKCVTEADDSLNKTNVSGKSLFGTCTDDSGCCETNGNKSIKPKNLSDTKSELLSLQAVNKDHIPVEKTTSEKTSSFPISSETLKDCQDDSNCCNETFCGASHDSKLNTYSGQDVLSKETHDLDNPVHSHVHDEVSLSPWIPNQDVSVSGCTSYSFTQPQCQTSFTQEKLSSDVPCSGTKASAVFNLKTSSYKSGSAECTDSIHCGENNSNSSSGSDVSEQEDVPVSYSPENSQDVLGLDRSQKKHGPVRQLDEFKHSDNAVDIVIGSGKVGSQSAVLNMSQDEGSNSACGVNQNKTSKLDSEFGESEKEPLSEAESTMSNARSRTSSRTSSRKESSDSNECMFEDVFSKQSYGKKQITKSVDTVSECSDSNVDLHDMYFDSYTSEIRRKRTAANYSPNAFAHLFKVNKHSESKPPVKKVSTRGKRKKNKQKLIPGVHYIIIGKFKGYKSMGVRLQKLKMDVGETVNVCDYLEKHREEKEYMRKAQLNELQNFGDQSVALIENHLSDDNSLHEMMDEHSLEAVDGEEFVSRSLNNPVETLDQNSLDCSSALTSESDCQEVNSACDIIKDAGGASSSYLLEHQVVKEGSHTDVFDDQTAESDNKSLSFKNERLKTDEDFKTKESSFTRNASSEEMDTNIEKFRALTNKEASKKNDRHKDLGRVELTTTIDKKIFPSSYQTAEKIEMFSRDVESDSALATGSTSFMCGDHSECFDSSNSNDSNSNFSCFKSKSDSQQDSSTQKDSNHTNGSSDSKHGKKTLKKKLTPNQKLGVAFLSTRRKKKGNKEGGKLMNSLSLLHQATIESLVDKSSELISDSSMASDVSKTSGKGDNSGRMVFSGRKPQKQLDRSTPPQLSNSSAKSGCAAFKKNGIQNNVESIYETPLSSVENQKDISEFRSLRSTDCSEVLASLRNTGNENDFLKSKPEVVTPPSKTAVVKLSPLLLSDISNINAQRKETSSKLSAMDTKCSDSSENHDAKEKESNIAENDISLKDIKQKPDTCYDGSNLSPRENLESSLSEKDAHSYSKKTGSSTDLNWTPVTDCIQSDQLFDPYINPIKDPQYEDISSDEDGNSDPADADGGGGGKTKANTSSKTPTPSQPSSSTVQMDTAPGEHEPAPEDDAQRSAPQGNRSVGSRGGAEKIVICPRVPPPSRDLVCLTAAAHGLGTVQNKKAFCSNPADMPENRRLLDGPQSRLQSALVKDLPEFKSSSSGTLLSWRQRFVANNRIFSSQTNIEPLWEKLQKDPEFKYVLSEDRHCVLTPCRPPPCKKKSSPG

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR030559	Family	DNA polymerase zeta catalytic subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016035	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985	Biological Process	translesion synthesis	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf366_16.15 global RNA-seq network