Gene detail

Detailed information of CsqKR_Scaf31_13.31 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf31_13.31	C-TYPE LECTIN SUPERFAMILY MEMBER	chr9	21707327	21720562	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf31_13.31

ATGGCCTTCCTGATGGCCTTCCCCGGACTGATGGCCTTCCCCGGACCTCTCACCAGTTTACGTTGTAAACATAATCAGCCGGTAACGTTTGCCCATTTGGAACAAGCTTTGATTGATATGTTGAACTCCATCCCACTAAAAATGATAATGCATGAACTGGGTCATGTTATTGGTGCCTATCACGAACAAATGAATTACAAATCGATAGCTCTGGCGCCGTATCTGTATGGCAATCTCCAAAATTGGGTTTTGAAAGAGTACATTCCAGTTATTTCGGAGAAGAACCACGTTATAGACAAGGATTATATCACATTTTATTTCGATCTGGATTCGCTTCTGCTATATTCACGTTATGGATATTCTGCGAACGGTTTTCCAACGTTCGACGTAATGTACCCTGACGTGTATCATCCCAACAGGCCCATTTTCATTGATGAGTTGGTTAAAGAGATACAAACTTTTTATAACTGCTGGGATCTGAAATCCTGTGGTTCACACAAACCGAACTGTGATAACGAGGGATACGCAGGTTATACTAATCACAGTTGCGGGTGTGTGTGTCCTGCAGGATTAGATCCTGCATCCAACTGTAGAGATGTTAAAAAACAACGGTGTCCTTTTGGTTTCACCGAATCGTCGGTGGCACTACAAGGCGTCAGTCATTTCACGATTTCAGAATACTACAGTCTTCAGACTATATTTTCGTACAGCACATTAACTCTCAAGTTTTGCAACAAACCAAATGCCAGCAAAATCACGAAGTGGAATCCTGGAATGATTGGCTTTGTGGCAGAGAACCACCAATGTCCTTCAGAGATGCAGAACGGGACGATTATATTTAACGGTGAAGTGGTTCTAATGTTTTGTGTTCAGCAAGGGTTAGTGACAGAACCAGTGACTGGAATTCCAACAGATCACGAGTTTGCTCTGTTCGCGCTTTCTAATTCCTGTCAGGAAATAGATGGTAAGTTCGATTTAAATCAAGAAAGTAAAACACCAGCTATTTCAACAGGCTTCATTGGTGAACAAGAATATTTCACGTTGAAACACTCACACATAACGGTAGAAGAAAACTCAAGAATTAAATTAGAATTTGAAGACTTCGATATACGTTATAACGATAATTTCGACTACAGAAGATACATCCTGAATGCCCTTCCTACGAGAATACATATGTCGGATATGCTTCCTCGTAACATTGTGTCCATATATAACCGCTTGGCAATTCGGTTGAAATCAGGAACTGTCAGATCTCGTGGAGGTCGTTTCAAAATAAAGGTTATGCGTCTCGGAGCTGAAGATTACTGCTACAGTGTATCTGATAAAGGCGAAAGTTACGACGGCGACTGGAACTACGCCATTGACGGAACAAAATGTCTTCCCTGGAATCTCCGATTTGATAATAATTTTACTTTGACCGGCTTTTCCGATTTTGACGGAACAGTCAACACGTTTCTCACTGGCTCGGCGTGCAGAAACCCGCAGGGACGACTCCATGCACCGGCATGTCTGACATTCGCTCAAGAAGGCACGTACCATCTACGATATTGTGATGTGTGTCATATAGAATACGGCATCAGTGATATTTATGAGAACTGCGTGGTGGCTGTCAGCCACGACTCGCTCGTCTGTAAAGGTCCTACTGCTGGCAAATGTCTGGAAACGTGTATAAACTTTGGTTACATACCCGAAATAAATACACCACCACCAGTGGATAATATTGTTTGTCCAGTTCCTCTGATTCCCAGCAACGCGATGCAGACAGCAGCTACCATAAGATCTGTGTACCATCCCGGCCACGTGGTGGAGCTGATGTGTGACTCGGGAAAATCAGTGAATATTTCCTGCACTACGTCTGGTTGTCCTGCGGGATGGGCGGAGTATTCAGGTAACTGTTACAAAGTCACTGGACGAGTGGACAACTGGTACAAAGCAAATACTTACTGCCGCAATTACTATGGAGCCACTTTGGTTTCTCTGAAAACAAACGCAGAACACGATTTCTTCTTAGACTGGAGAGCGAAACTTGGATCAACTAAACCATGGTGGATTGGAGCGTTTTACTACAAGTACTGGAAATGGTTTGATGACAAATCTTCTGTCAGCTCGTTAGAAACCGCTACATCTTTTGGTTATCCTAGAGAACCTATGAAGTGCACAGATCGTAAAGAGGAATGTTCGACTCTGTTAAATGAAAACCCGAGAGCCTGCTTAGACCCTGTTATAAAAACCAACGTTTGTCCGTACACTTGCAACCACTGCCCACTAAGACAACTTCCGGCAAATGCTGCAACAACAGAAAACAAGACGTCACTTGGTGTAGGCGAAATTGTTGAGCTGACATGTGATCCAGGCTATAAGCTCCAGAGTGGATCTCTTGTTAGAGCCTGTACGAGAAACGGCGCATTGTCTGGATCCGAACCTGTCTGTACATCGCTGTCTCATGTTATAACACCCGTGAACACTTTTCGTATGGGACGTTATCGATTTACCACATCACAGTTTAACCTGACAGTCTACACTGGAGAATCGAAACAGCTTCTAATACCTCGAGATGGTCAAATCCATTCCTGGCAGATCTACTGCACGATCTACACACTAATTGGCAGCAATACAGTTCAGTGTTTCTCAGGACTGATAAGAAATGTAACTGTTGACGTATCACAGAGAATTTCTGTTCGGACCGGTGATCGCCTTGGGCTTTTTGATATAGCTGGCAACTGTTTCTCTTACTATCCCTGCAAAAGTCGAAACGTCCCAGATTTTTCAAACATTCACTACTTCTTAGCCAACAGCAAAGACGAAATAAGACCATCTTCTCGGAAAACGTTTTATGGTTCCATCTGCCGAATGTTTGCTATTAATGCCGGAGTTGGACAGTAA

Transcript

CsqKR_Scaf31_13.31

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000001	Domain	Kringle	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR038178	Homologous_superfamily	Kringle superfamily	Interproscan
IPR051004	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0044419	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf31_13.31 global RNA-seq network