Gene detail

Detailed information of CsqKR_Scaf280_8.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf280_8.15	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	chr12	4755106	4768391	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf280_8.15

ACGGAAACGCGTGTTTAGAAAACGAAACATCAACAAGCAACAAGATGTTAGACTTTTTTTCAATTTTTAGTAAAGGTGGGATTGTTTTGTGGTGTTTCCAGGGAACATCTCAGCTTTTTACACCTTCGGTTAACGCTTTGATTAAAAGCGTCATTTTGCAGGAGCGAAGTGGGAGTAACTCATTCACTCATGAACAACTGACACTGAAATACAAACTTGATAATGAGTTTGAGTTGGTGTTTGTAGTAGCGTATCAAAAGATTCTACAACTGTCGTATATAGACAAGTTTTTGAGTGATATACAGCTGGAGTTCAGAGATAAGTACAAAGATGATTTACAACAGAGTAACGTCTGTCGGAATTACAACTTCACTGAGACATTTAACAAGATGCTCAAGGAGGCAGAAACGAGGAGCAAGATGGAGGCACAAAAACCAAGACCGATGATGACATTTGAAGAATCAAAGAAATCGAAGAAAACTGTAGCCTCCATGATTACCAACAAGAAAGACGAAAAGAAGTCATCATCAAAAACCAAAGCAGCACCATCGAAAGGGAAGGAAAACAAAACCCCAAAAGAAACTGTCATTGAGGCACCCCCTCAGAAAACCGAACCCGAAAAACCTTTAACCAATGGCGAACTGGATGATGCGACCATTATGAGAAACCGGGAAAAGTTCTTCAACCGAGGAAAAAAAGTTTCCAAATCACCAGGGTGAATTTTTAAAATAAATTTCTTAATTATTTTGGGTTTTCTCTGAATTGAGTTCTTTTTAATGATGTTTCTTTTTTGTTTGGAATAAAATTTCTTTGTCAGAATTTCTCGAAATTTATGACAGAATAAAGTAAAGACTTTAAGATGCCTTTGTGGTTGCAAAAACTGGTAATCTAAATACTCTTAATTTATTATATTTCTAAGTATTTCTCTCTCTCTGTCTCCCCTACCCTCTCTCTAACCCATCTCGCTCACTCTGTCTCTAATGTTGAAATGTGTTAAAGTATCATTAAGCATATTTGTATTCCTAATTAATGGCTATCAGCCTTTATTAATAATAAAGTCAAAAAGATAAAATAAAACAGAATCTTCATTCTTCTTGAACATTTTTACAATTCAAAAATATTTACAATTACATGCTCAAGAACTATTGTTTTCTCTCCTTCTCATTTCACAATTTGGTACCGAATCGCAGATTCATCGTTAATAGTTATTTGAAATTTAATTAACCGTGTAATTAATCTCACAGACTCTTAACCGCTATTTCAGGAAGAGTCCTGAGATTGAGAAAAGGAAGGGGAAAGCGAAGAGAGTCTGGGGGGTATCTGGCAGCAACAAGGATGCCATCGAGCTTGATTTCAGCGGTGGGGGGGATGCAGACAAGATGAGGGGCACCAAAGATGGAACTCCTACCCAGGCTGAGCTGACCCAAGTTGGACAGATGAGTGGACAGCTGAAGGACATTGAGCCAGAGAGCAGCAGTGAGGAGGAAGAAGAGGAGGAAATTGAAGAAGAACAGGAAGTCGACAAGAAGAGTAACAAAGGTTCCTCCAAGACTTCGAGTTTTGGTGTGTTCTCCATGTTCAAAAATCTTGTGGGATCAAAAACTTTGACTAATGAAGATCTGCAGCCAGCCCTGGACAAGATGAAAGACCATCTTGTTGGTAAAAATGTTGCCACAAACATAGCTGAAAATCTTTGTCAATCAGTTGGAGCCAAACTTGAAGGAAAAGTTCTTGGGACATTTGGAAGCATCACATCGACTGTCAAAACGACTCTACAAGACTCCTGTGTCCAGATCCTGTCGCCACGGCGACGCGTGGACATTCTTCGAGATGCCATGGAAGCGAAGCAACAGCATCGCCCCTACACTGTTACGTTTTGTGGTGTGAACGGTGTTGGCAAGTCGACAAATCTGGCAAAGGTGTGTTTCTGGCTCATAGAGAACGGATTCAGTGTTCTCATTGCAGCCTGTGACACATTCCGGGCGGGTGCTGTGGAGCAGCTGAGGACCCACACCCAGAAACTGAATGCCCTCCACCCACCAGACAAACATGGGGGAGGCAGGTGGTACAGCTGTATGAGAAAGGTTACGGGAAAGATGCTGCAGGGATTGCTATGGAAGCAATTAATTATGCCCGTGACATGCATATTGATGTGGTTCTGATAGATACTGCTGGTCGAATGCAAGATAATGAACCCCTAATGAGAGCTCTGGCTAAGCTGATAAACGTGAACCAGCCTGATCTGGTTCTGTTTGTTGGCGAGGCTCTGGTTGGAAACGAGGCTGTTGACCAACTGACCAAGTTTAACCAGGCTCTTGCTGACCACTCCAATATGACTGAACCTCGTCTCATCGATGGAATCATTCTCACCAAGTTTGACACCATTGACGACAAGGTTGGAGCAGCTGTGTCAATGACATACACCACTGGTCAACCCATCGTGTTCGTGGGCACAGGACAAACTTACACAGATCTTCGTAACCTGAATGCAAAGGCTGTCGTCCATGCTCTTCTCAAGTAAAAAAAAAACACAAACACAAAACCCTTTGAAATAAGCAGCCCTACAGCTAAGTTTTACATTTTATAATTACGTTTGAGTATGATTTGAATTTACATTTTAGAAACAAAAAAACCCCCAAAACAAACATTTTTGTTAACATTGGTTGCCTATATTTGAACCTACTTGTTAATTGTTTAAGTAAAAAAAACTTTCTATGAAATATAGTGAATAGTGTGTTATCGATTATGTTGAGGATTATTTGAGTTCGAGTTTTCGAAATCTGTTTAAAATTGATAAATAAAATCTTTTTGTTAACATTGACTGCCTATGTTTGAATCTGCTACGTATATGTTTTGAATTATAAATTGAATATAAACTTTGTTTGAAATAATATCCTGCGAGTTAGAAGTATATTATGATTATATTGACAATTACGTAACTGAAATTTTGGTATGTATTTATGTCAAAAATTGGCCATTTGTACCTGAACCTGCTGCACATGTTTAAATTATAAAATGAAGTAAACTCTCTTTGAAATACTAGCCTGCATTTGGATGGTGTTTTTAATGTACATATAATTATGTTGAGAATTATTTATCTGAAATTCTAGGATGTATTTATGTTAAAAATAAATATTTATTAAGATTGCTGCATGTATTTTTGAATTATGAATTAAAGTAAAATTTTCTTTGAAATTTTAGCATGCATTTGAACAGGGTATGTTTAAATTAATGTGGAAAATTAATTAACTGAAATTTTATATTTATGTGGTAAAATTAATTAAAGTAAATGTTTGTATGTATTTGTGTTAAAAATAAAATTTTGATGACTGACTATTAATGTATGTTTGAATTATAAATTAAATATAAAATACTAGCCTGCATTTGAACAGTGTATGTTTATATTTATGTTGAAGATTATTTAACTGAATTTTTAAAATGTATTTATTTATGTTAAAAATAAAACTTTGATAAGAATGACTTGCCTACATTTGAATCTATTTATGTATGTTTGAATTATAAATTAAATATAAATTAAACTTTGTTAGAAATATCAGTCTGCAATTGAAAGTGTATTATGGTTATGCCGAGAATTATTTTAATTGAAATTTTAAAATGTATTTATGTTAATAATAAATCTTTGTTTAGATTATTAACTGCCTTTATTTGAAGCTGCTGCCTGTATGATTGAATTATAAATTGTTTTAAAAAAAAAAAATTTGTAGAAATATCAACCTGAAAATGAACAATGTTTAATAATTCAAATTTCAGAATGTATTTACGTAAAATATTTGTTAAGATTGACTTCTGTATTATAATCTGCTACATGTATGTTTGAATTATAAACTGTATTTAAACTTTCTTTGAAACATTAGACTGCAGTTGGTCAATGGTTTTATATTTTTGAATTACTATGAGAACGGTTTGAATTCAAATTTTAAAATGTGTCTCAGTTTAAAAGTAATTTCTTCTTATGTGGGTGTTTCTATATTTAAACGTACTGTTTTAAGAATCTTAAGTGTGTTTGAATTAGAAATTGTTTAAGCATAGTTTAAGTGAACTATGCCCTGTTATATCTGTTACAAAAACAGTTTCTGAAGTTAAATGTTAGTTTAAACAAATAAAAAGTCAAATAGTTATTTAGGTTTCTTAAATTGTTAAATAACATCCATTGTCATAGACATAAAAAAAAAAAAATGAATTGAAAAATTTATTTTTATTAACACATTTTCATAAATATATTGAAAATTATAAAATATTTTCGATAAGTTTCTGAAATATTACTATGAATGAATTAACACATAAATAATTTGACCACTTTTCAAAAATATTAAAATAAATTTCTTGACAGTTAAAAATTATTTTATAAACTTTCAGAAATATTACATTAAATATGTTAAGACTTATAAGTTATTTTTTAGGTTTCAGAATTGTTAAAAAAGCATTTTGAGAATTAAAAATATTTTGTTTCAAAAAAAAAAAAAAGTTGTACCAATATTTGTAATATTTATTGTTTTCTTTTCAGCATTATTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00448	SRP54	SRP54-type protein, GTPase domain	Domain	Interproscan
PF02881	SRP54_N	SRP54-type protein, helical bundle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000897	Domain	Signal recognition particle, SRP54 subunit, GTPase domain	Interproscan
IPR013822	Domain	Signal recognition particle SRP54, helical bundle	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036225	Homologous_superfamily	SRP/SRP receptor, N-terminal	Interproscan
IPR042101	Homologous_superfamily	Signal recognition particle SRP54, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43134	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005047	Molecular Function	signal recognition particle binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006605	Biological Process	protein targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045047	Biological Process	protein targeting to ER	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf280_8.15 global RNA-seq network