Gene detail

Detailed information of CsqKR_Scaf27_5.18 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf27_5.18	AAA DOMAIN-CONTAINING	chr3	3729312	3737699	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf27_5.18

TTGTATTTTTTATTATTATTATTATTATTATTATTATTATTATTTACTGGACGAATTACTCATTGTATTTGGTCGCCTTCCCTTGTCAGGCACTGGTATATATTTCTCACAATATAATTACTGGGCAGAGCTAAGAATAAATATAGTTTTCTTATAAACATATTTTTGTTCAGAATAAAATTAATATGAGAATTTAAACAATTTATTAAAGGTTATGAGTCACAACAGCGAAAAGGTTTGGGTGTATGATTCATATTCAGTCGAAAACCTTTTGAAATAAATAAGAACAGAAAGCTTCACAGATTATCTCCCTCAAAAATGATCATGTGACCAATCTCGGAAGTAAACGCCATGTTATTCGGAATAAATTGATAAAAATAGCATTTTAATAATAAAATCCTGTTTTGTTTTATTCTCTTGTCATCTAAGTCAATTTACTTGACTTTAATATTTATCCATGACGACAGGAAACACATTACAGAAAGCTATTGACTTGGTGTCAAAGGCAACAGAAGAAGACAAAAATAAGAACTACGAAGAAGCACTAAGGCTGTATGAACATGGAGTAGAATATTTTCTCCATGCTATCAAATATGAAGCACAAAGTGATAAAGCAAAAGAAAGCATTCGTCAGAAATGCATTCAGTATCTTGACCGAGCTGAAAAGCTCAAACAGTACATAAAGAAAAAAGACAAGAAAAAGCGTGTGATGGATGGAGAGACATCTAGTGGTAAAAAAGAAACTAAAAATAATGACAGTTCAAGTGATGAAGACTCAGACAGAGACCCAGAAAAGAAGAAATTACAAGATCAATTATCAGGTGCAATTGTAATCGAGAAGCCGAATGTTCGGTGGGAGGACGTTGCTGGACTCGAAGGAGCAAAAGAAGCTCTCAAAGAAGCTGTCATTCTTCCAGTCAAATTTCCTCACCTGTTCACAGGAAACAGAAAACCATGGAGAGGAATATTATTATTTGGTCCACCAGGTACAGGCAAATCATACCTGGCCAAAGCTGTAGCAACAGAAGCAAACAACTCTACATTCTTCTCAGTGTCTTCTTCAGATCTGGTTTCAAAGTGGCTCGGAGAGAGTGAAAAACTTGTGAAGAATTTATTTGAGTTAGCAAGAACAAACAGTCCGAGTATCATCTTCATTGACGAGGTGGACGCATTGTGTGGATCTCGAAGTGAGAATGAATCTGAGTCGGCTCGTAGGATCAAGACAGAGTTTCCTTGTTCAGATGCAGGGAGTGGGCACCAACAATGACGGGGTCCTGGTTCTTGGCGCCACAAACATACCATGGACTTTGGACTCGGCCATTAGGAGAAGATTTGAGAAGCGGATTTATATTCCTCTACCTGAAGCAAATGCGAGAACAGAGATGTTCAAGTTACATTTAGGAACCACACCAAATGATCTTACAGATGATGACTTCCGAGAACTTGGCAAAAGAACAGAAGGTTTTTCTGGAGCTGACATCAGTGTGGTTGTCAGAGATGCCCTCATGCAGCCTGTGAGAAAAGTTCAGACAGCTACACATTTTAGAAAAGTTAGAGGTCCCTCTAGGTCAGATCCGTCAGTGATTTGTGATGACCTTTTGACCCCATGTTCTCCAGGTGCCCCCGGGGCTATAGAGATGAGCTGGACACAGGTACCAGGTGACAAGTTGCTGGAACCCATTGTATCCATGAGTGATATGTTGATGTCACTTTCAACTTCAAAACCGACAGTGAACGAGGAAGACCTGAGGAGACTGACTAAATTCACAGAAGATTTCGGACAAGAAGGATAACTCTATTGACTTTATAGAAAAAAACTATTAAATTTTGTTATGTGATTGCAAAATAAAATGTGTTTTTGTTTTCATGTTTCCAATCAAGATGCATTTATCATTTGTGTCTGGTTTATTTTCTACCATCTTTCACCATCTGAAAATAGTCAACTAGGTTGAGTATTTAAAATACTCTCTTGAAAGGAAACATCTAATAGACATGAAAAATTTAAATTAACACTTTTGTTTCAGCTTTCTTCAGTTTTTATGACAGTGACTGCATATTGTTGATATTATTTTTTTTTTGTTTTTTTGTCATAAAAAAAATATTTAAAAATTCTTTTATTGATAATTTAGAAATAAATAATTAATAAAATAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF04212	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR007330	Domain	MIT domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036181	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR045253	Domain	Vacuolar protein sorting-associated protein 4, MIT domain	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf27_5.18 global RNA-seq network