Gene detail

Detailed information of CsqKR_Scaf269_0.22 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf269_0.22	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	chr2	42048	61247	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf269_0.22

ATGATGGCGTACAAGGTCTTCTTTCAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATATATAAGTATAGATAGAGTGAGCGAAAAGAAAAGAGATTTTGATTCGCCAGAGTATTATCCTAAAAATGAACGAAGTAAGGGTGAATTTAACGAGGACAACGAAATACATAGATCAAAGTTCAGAGGTCGAAATCACGAAAGCAGGGAGAAAGCAAAGGTAATTGTTGATCCACTCGAAGAAGACGGTCATGTTCTTAAAACCAAACACGGTAAAGACGATAACGTACAATATAAACTAAACAAACAAACAAAAAATGATAAAGATGAAGACAAAATAAACAAACAAACTAAAAAAGAAGATTCTAAAATGGCTGCCGATGACAGTGGTACTGAATCAAAACACAGGAAACACGAAATCAATGTTAAAGACGAAAACCAGTACAAAAACAAATTTCATAAAAAAAATCCAGAAGTGGGAAAAACAAAACTTAGTAAAAATGCTTCCAAAGATGACGTCATAAAGGATACTGATAAGGCGTCGCTAGGCGACGATGACGTATTACGGATAGAACGTCTGAAGAAGCTGCATAAAGGGAACGTGGATTTTGAGATGGAGGAAGAAGACGTGCAGGTAATGAAGGAAAAGAATGAAAGACGAAAAGCTTTTTTTAAAGCGCTGGAGGAAATACACGAAGACTACAACGACGAGGCCGAGGACGAACACTTCCACGAGCGTGACGACGACTTAGCCATCGCGACAGCGGCCTGGACTGACAACTTCCTGGGCGCGCTGCAGCTGGTGGAGAGTGTGCAGAGATACCTGCCCAGAGCAGAGATTGGACTGTTTGACCTCGGCTTATCTGACGACCAGCGAAAAATGTCACGTATAGGCGGCGTCTCCATCGTAGGTCGCAGACGAGATTACTCGACATTCGTAGTGACTCACCCTGACATGTACCACTACTTCTCCACCGACCTCAAACAGCTGCGGCGAACCAAGCACGTGGAAATCTCAATGATCATTCTTCACAACACTGCACCTGTCCGGATGAAGTTTATGCGCTGGCTCTATCTCTGCTCTATGGAGGAGTGGTGCATAGCGCCCCCTGGATCCCACACGAGATGTGATCACAGGCAACACGCTAATTCGAGGCTATGGGCCAACTGTCACAGATACGATGAATCGGCGATAAATATTTTACTTGCTGCTTGTACAAATCCTGAAAATATGAATTTTCTCTTCAAAAACAAACACATGATTAACGCCACGTTTGACGTCATACAAAATACTGGACTGGTGAGCTGCGCGTTCGAATGTGAGATCCGGAAAAAATGTAAATCATTCAGTTTTGAGTACGTCAGTGGAAAATGTTCACTTTATGATACCTGGATTCAGCAGTCGTTGATTCGTGTCAAACCAGGAACAGATTTAAGTAACATACAAGACTGGCCTTCAAGGCTGGCGGGACCGTGTCGGAATCATAGCTGTGCTCACTACGAAGTCTGCAAAGCGGAAGACGCAACCTCAAAACAGTGCGATGCTGCATACTGTCCAGAGCCTCCTGTCGTGCAACACGCCACAGCTAATTTCACTACAACTTTTGAGACGACTAAAGTCGGAAGTCGTCTGTCGTACGTGTGTGATACAAACTTCAAACCGGAAGGAGAACGAATCTTGTGCCCTGGCGTCAGTTTCAAAGAGAAGTGCTACACTGTAAGTTCCGAGAAGGTCACGTGGGTGGAGGCACGTGACGCATGCTTTGTCAATGGTTCGTTAGTGGACATCAAAACTGAAGAGGATTACAACCTTGTGTCTACAATAATAAAATCTGGAGAGAAGTACTGGATTGGACTGAATGACATTGACAAAGAAGGTGTCTGGGTATGGCCTGACGGAACTCGAAACTCGTATTTAAAGTGGGATGTGGATGAACCCGATGAAAGCAGGAAAGAAAACTGTGTTTTGTGGGATGGAGGCAAATACAGAGATGAAAACTGTTCCTACCGACTTCTTTACGTGTGCCGAGTCTATCCAGCATGTCCTTACCCGCCCACTGTGGAGAACGCCGAGCCTGACGTTTCACGCACACCAAACACGTCGGCTGGTACAGTCTTGCCATACACGTGTGACAACTACTACGAACCCGTTGGCGAGATGAGATGCTTGACCGGCGACATAACAAGTTGTTCTGAGCTGCAGAAATGTAACAGTCAGTACACTGACGGAGAATACTGGTTGACAGCACCGGGACTTGGCGGCAAAGGGGTTAAAATTTACTGTCACAACATGTCTTCACCGCAGCCATCCGAGTTTGTAACGCTGGAAACCAGTGCGGTGATAGAGAACCGAGGAAACGGAAACGTGGAATGTGGAGTCAACTACAACGACTCTGACGCCGTCTGCTGCGGAAAACAAGAATGGAGGAAAATAAAACTTATCGATTTGAAGAGCATGTTAATCGATGTAAAAACGTTCCACGCCTTTACCCAGAACAACACCTGTGGAAGCCGTTCTAGTTTTGGCACCAGTTGCGACTGTGGTAATTATTTGAAAAACTGCACCGGCGAGTTGACAGGCAGCCTGTTCTTCTTCCTTCTCTATTCCACTGGCTTAAGACTTAACCCATCCGTAAACTGTCCAGAGCCTCCTGTCGTGCAACACGCCACAGCTAATTTCACTACAACTTTTGAGACGACTAAAGTCGGAAGTCGTCTGTCGTACGTGTGTGATACAAACTTCAAACCGGAAGGAGAACGAATCTGTCTGAAGAATGGAAGCTGGTCTAACTTTAGATGTGTGCCTAAACCTTGTCAAATGCACTGTATGCCAAATCAGGCAAAATGCTTTGTAGTGTGTTCGTTCAAAGTCAAATGGCATGATGCTCGAATTTTCTGCAGAAATTTAAGAGGGAAAAATAACAGTACTTTGGCAGATATCAGAACAAAAGAGGAATACAATTTCTTGAAAGGAATACTGAAGATTGGACTAATATACTGGATTGGACTCAACGACAGACAGAAGGAAGGGTCTTGGGTGTGGATTGATGGAACAAACAGCGGTTTTTTTAAGTGGATGGAAGATGAACCGAACGGAAGCACAAATCAGAACTGTGCGTACTGGAATATCAGAGGCGAATACAGAAGTGCGTGGTGTCTTCTCAAACGTCGTTTTGTGTGTCGAGTCGCAACCACGCCTACAGCTGACACCAACGACAACAGCGGTTAA

Transcript

CsqKR_Scaf269_0.22

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF08685	GON	GON domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR012314	Domain	Peptidase M12B, GON-ADAMTSs	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR050111	Family	C-type lectin and snaclec domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf269_0.22 global RNA-seq network