Gene detail

Detailed information of CsqKR_Scaf25_2.31 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf25_2.31	RIBOSOMAL PROTEIN S6 KINASE	chr8	14285956	14304774	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf25_2.31

ATGGCGAGTGAAAGTGGCACCTCCTACTATCAGGGAGGGATGTCGAATAGGAATTCATTTGGTGAGATCAGTATTCGATATGGAATTGAGGCTGACGTGTCTGATGCTGACAGACAGCAGCGTCTGGAGGAAGTTCGCGAACAGTTGCGGAGAGAAATTCGGAAAGAGATGAAAATAAAAGAAGGCGCAGAAAAGATGCGCGAGGCTTCTAAAGACAAGAAAAGTCTAAACAGTATTGTTAAACAAGCTAACAATAAACTTCAGGATCTTCAGCAAGAATTGCATGAAGTGAATTCTTACATGCTGCTGGCCAATGCAGCTTTCTCACCAGAAACACTTTCAGATAGTTCATCACTTTGCTTGGGTGGGTCTCTTATACAGGTAAAACAGGGAGCTGAAAACATGATAGCAATGTACAGTACTGGTTCATCTCGAGATAAGAAATTGTTAGCAGAAGCTCAGGAGATGTTAAAGGATGCCAAGACAAAGATTGAAATTATCCGAATGCAGATTATTAAAGTTGAACAAGATACTGTCTCAACAGACAGTGATGCTGGTCATCGATGTGAGGTTCTGTCTCCTTTAGAATTACGAATTGAGGAACTGCGACATCATCTGCGGATAGAAGCTGCAGTGTCAGAAGGTGCAAAGAATGTTATTAGATTATTACAGAATTCAAAGTCTGAGGATAAGAAAGCTGAAAAAGAGGCTCAAACAAGTTTGAGTGAATCGAGTCAGAAGCTGGAACTGATGAAGATATCTCTGGAGAAACGACTCACAGAACTTGAGCCATACTCTGGGAAAGTGGAAGTCCTGAAAGAAGAGTTGAATGAACTGATACACCCTGCTTACACTGGACAGCGGGCATCACATGCAACAATGCCAAAAAACTCACCACTGGCCAAACCAGCATCACTTACAGGCAAATTGGAAGTTAGATTGGTTGGTGTGCAAGGTTTATTGGAGGAATTTCCAACAAGAAGAAAAGACACTCTGCAACTGTTGATGTCGAGTCCTGGTGAAAGTCGAAGTCTGTTACGTCGTGGTAGCAGCAAAATTTACAATGTTAAAGATGAAATATCAAATGAGGTGATGGCCGTACTTAAACTGGACAATCAGCAGGTTGTGCAGACTGCGTGGAAGGTGTGCAGTCAGCAGTGCTGGGATCACAGATACACTATAGATCTGGATCGGTCACGAGAGCTGGAAATTGCTGTGTTCTGGAGGGACTGGCGCCAGATGTGTGCAGTGAAGTTCCTGCGATTAGAAGACTTTCTTATTGACAAGCGACATGGGATAACTATTCATCTGGAACCTCAAGGAATCTTGTTTGCTGAGCCAAAGCTTCAGAGACAAAGAAGAATATTTCCTAAGCATAAAGGGAAGAACTTTTTGCGTCCAGGTCAGATGAATATTAATGTAGCAACATGGGGAAGACTTATGAAGCGAGCGTTACCACCAAACTGTGCTGATGCCAACATCTCGAGTCCTCCAACCAACATCGCTTCACCAGGTATTATGTCGTCAGATCGTGCCCCTCCTGTCCAGGAGATCAACTTTGAGCCACCCACCCCAACAAAGGAAACCGAGGCTAACGAAAGACTGGCCTTTAATAAAACAACAGAGGAATCACCAGAAAAAGATGTTAAACAAGCCCTGTCAAACTTTGACTTCCTGGCTGACGATCAGATTGGTTCGCCCAACAACACTGGTATTCAGTTAGAAGACGCAAATGAAATTATGTCTCACAAAAAGACAAGAGCGCCCTCTCCACCTCGCAATACAGCACCTTCTTTTGTACAGACAAAGGTGAAACCTCCACCCCTACCAAGAAAACTCGATTTGAATAATCAGCCATGTAACATGGATGATTTTAGGTGCATTAGTGTTCTAGGAAGAGGCCATTTTGGCAAGTCTCCTTTCCCCGGTGATGATGAAGAGGAGGTGTTTGACAGCATCGTCAACGAAGAAGTGCGATATCCACGTTTTCTGTCTACTGAGGCTATTGCCATAATGAGACGGTTGTTAAGAAGAAATCCAGACCGCCGTCTTGGTTCAAGTGAGAGAGATGCCGAAGATGTTAAAAAACAGGCTTTCTTCAGGAGTCTTGTTTGGAATGATCTGCTGATGAAAAAGATGAAACCACCATTTGTACCAACAGTGAAAGGTCCAGAAGATGTGACAAACTTTGATGAAGAATTCACACAGGAAAAGCCGATACTGACGCCAGCTAAAGAGCGCCGTCAACTGACGCTTGACGAACACAACATGTTCAAAGAGTTCTCTTACATTGCTGACTGGTGCTGA

Transcript

CsqKR_Scaf25_2.31

GACCACATTAATGTCAGCGCACTGTGTGGGATGTCTTAAGTGTCATTACGATTAAACAAAGTGTGTCACTGCGAAGGAATTCATGTATTTTATTTGTTTATTTCTTGAGTAATGTAACAAAAAACATGAAGTGTTTTTGAATTATAGATAATCGCCGCTTTGGCTTTAAACTTATTAAGTGCCGAGACTTCTGCAGTAAAATGGCGAGTGAAAGTGGCACCTCCTACTATCAGGGAGGGATGTCGAATAGGAATTCATTTGGTGAGATCAGTATTCGATATGGAATTGAGGCTGACGTGTCTGATGCTGACAGACAGCAGCGTCTGGAGGAAGTTCGCGAACAGTTGCGGAGAGAAATTCGGAAAGAGATGAAAATAAAAGAAGGCGCAGAAAAGATGCGCGAGGCTTCTAAAGACAAGAAAAGTCTAAACAGTATTGTTAAACAAGCTAACAATAAACTTCAGGATCTTCAGCAAGAATTGCATGAAGTGAATTCTTACATGCTGCTGGCCAATGCAGCTTTCTCACCAGAAACACTTTCAGATAGTTCATCACTTTGCTTGGGTGGGTCTCTTATACAGGTAAAACAGGGAGCTGAAAACATGATAGCAATGTACAGTACTGGTTCATCTCGAGATAAGAAATTGTTAGCAGAAGCTCAGGAGATGTTAAAGGATGCCAAGACAAAGATTGAAATTATCCGAATGCAGATTATTAAAGTTGAACAAGATACTGTCTCAACAGACAGTGATGCTGGTCATCGATGTGAGGTTCTGTCTCCTTTAGAATTACGAATTGAGGAACTGCGACATCATCTGCGGATAGAAGCTGCAGTGTCAGAAGGTGCAAAGAATGTTATTAGATTATTACAGAATTCAAAGTCTGAGGATAAGAAAGCTGAAAAAGAGGCTCAAACAAGTTTGAGTGAATCGAGTCAGAAGCTGGAACTGATGAAGATATCTCTGGAGAAACGACTCACAGAACTTGAGCCATACTCTGGGAAAGTGGAAGTCCTGAAAGAAGAGTTGAATGAACTGATACACCCTGCTTACACTGGACAGCGGGCATCACATGCAACAATGCCAAAAAACTCACCACTGGCCAAACCAGCATCACTTACAGGCAAATTGGAAGTTAGATTGGTTGGTGTGCAAGGTTTATTGGAGGAATTTCCAACAAGAAGAAAAGACACTCTGCAACTGTTGATGTCGAGTCCTGGTGAAAGTCGAAGTCTGTTACGTCGTGGTAGCAGCAAAATTTACAATGTTAAAGATGAAATATCAAATGAGGTGATGGCCGTACTTAAACTGGACAATCAGCAGGTTGTGCAGACTGCGTGGAAGGTGTGCAGTCAGCAGTGCTGGGATCACAGATACACTATAGATCTGGATCGGTCACGAGAGCTGGAAATTGCTGTGTTCTGGAGGGACTGGCGCCAGATGTGTGCAGTGAAGTTCCTGCGATTAGAAGACTTTCTTATTGACAAGCGACATGGGATAACTATTCATCTGGAACCTCAAGGAATCTTGTTTGCTGAGCCAAAGCTTCAGAGACAAAGAAGAATATTTCCTAAGCATAAAGGGAAGAACTTTTTGCGTCCAGGTCAGATGAATATTAATGTAGCAACATGGGGAAGACTTATGAAGCGAGCGTTACCACCAAACTGTGCTGATGCCAACATCTCGAGTCCTCCAACCAACATCGCTTCACCAGGTATTATGTCGTCAGATCGTGCCCCTCCTGTCCAGGAGATCAACTTTGAGCCACCCACCCCAACAAAGGAAACCGAGGCTAACGAAAGACTGGCCTTTAATAAAACAACAGAGGAATCACCAGAAAAAGATGTTAAACAAGCCCTGTCAAACTTTGACTTCCTGGCTGACGATCAGATTGGTTCGCCCAACAACACTGGTATTCAGTTAGAAGACGCAAATGAAATTATGTCTCACAAAAAGACAAGAGCGCCCTCTCCACCTCGCAATACAGCACCTTCTTTTGTACAGACAAAGGTGAAACCTCCACCCCTACCAAGAAAACTCGATTTGAATAATCAGCCATGTAACATGGATGATTTTAGGTGCATTAGTGTTCTAGGAAGAGGCCATTTTGGCAAGTCTCCTTTCCCCGGTGATGATGAAGAGGAGGTGTTTGACAGCATCGTCAACGAAGAAGTGCGATATCCACGTTTTCTGTCTACTGAGGCTATTGCCATAATGAGACGGTTGTTAAGAAGAAATCCAGACCGCCGTCTTGGTTCAAGTGAGAGAGATGCCGAAGATGTTAAAAAACAGGCTTTCTTCAGGAGTCTTGTTTGGAATGATCTGCTGATGAAAAAGATGAAACCACCATTTGTACCAACAGTGAAAGGTCCAGAAGATGTGACAAACTTTGATGAAGAATTCACACAGGAAAAGCCGATACTGACGCCAGCTAAAGAGCGCCGTCAACTGACGCTTGACGAACACAACATGTTCAAAGAGTTCTCTTACATTGCTGACTGGTGCTGAGTCATATTAAGTTGATGAATAAACAGCCATTATTAGCTGGGCAAATGCTCACTTGTTTAAAAGTTCAAAAAAAAAAAAAAAAATCTAATGCTCTGCTTTTCTTTGTGTTTGACTAATCTTTGCAGGACGTGCAGGGCAGATGGTGTTACTCCAGGACATTTCTGGACTATGCTCATGTGTCAGTTAGTGTCAGCACAGTTCTGGTATTCCAGTTCATATCGGCAGAGTTCTGGTTTTACCAGCTGGTGGCTGGACAGCTCTGGTATTCCACGTTGTTTCTGGACCTGTTGTGGTATTCCAGTTAAAAAGTTTGAACAATTTTGATGTCCAAGTTTGTGTTGGAACAGTTCTAATAATACCAGTTAGTGTCTGGACAGTTCTGGTATTCTACTAAGTGTCGGAGGCATTCTGGTATGTCTTTTAGTGTCAGAACAGTTCTGATGTCTCTGTATCAGTTATGTATCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00433	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan
PF02185	HR1	Hr1 repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000961	Domain	AGC-kinase, C-terminal	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011072	Domain	HR1 rho-binding domain	Interproscan
IPR017892	Domain	Protein kinase, C-terminal	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036274	Homologous_superfamily	HR1 repeat superfamily	Interproscan
IPR037313	Domain	Serine/threonine-protein kinase N, first HR1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24351	RIBOSOMAL PROTEIN S6 KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf25_2.31 global RNA-seq network