Gene detail

Detailed information of CsqKR_Scaf247_13.34 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf247_13.34	SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING	chr15	11941155	11949623	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf247_13.34

ATGTGTGATCAGGGTAAGACTACTTTAAGGCAAGGAAGCAGACATTCAGCTGACTGTGTTGATAAATGCCCTGTTGGCCAGTACTTGAATGAGAATAAATGTACAGACTGTCCAAGGGATTATTATCAAAATGAAGAAGGAAAGAATTACTGCCTTCCCTGTCCTGTGGGCAAGAGAACAAAGGATCCCAAAACAGATTCAAAAGACAAATGTTTTGATGATTGTCCTTCTGGAACAGAACTAAATGCAAATGGCACCTGTACAGAATGTGAACAAGGATATTATCGTACACAAACACTGCAAGATGTATGTGAAAGATGTCCTGAAGGGAACACAACACTGAAAAACAAATCTTCATCTGTTTCTGACTGTGTTTTGCCCAACTGTACCAAAGGACACTTCATAAATACAACTGAAAAAACATGTGTTCCTTGTCCTTTTGGTCAATATCAACCTGACAAATGGAAATTTGAATGTATCAAATGTGAAGAAAATTACACCACTGAACTTGAAAATTCAGTATCTGCAGATGACTGCAGGTTTTTCTGTAAGCCTGGCTTTGAAGAAAACCCAGAGAAACCTAAAACATGTAGAAAGTGTTTAATTGGATTTTATCACAATGGTAGTCTAGAGACTCGCTTTGAGAACTGCACTGCTTGTCCAAGTGAATTTACTACAGAAACTGATGAAGCTAAGTCAAAGGAAGATTGCAAAATTAGAATTTGTCAAAAAGGGTCATACAGAAATGTAACAGATAACCTCTGTTATAAATGTCAGATTGGTTATTATCAACCAGATGACATGAAAACATCCTGCATTCAGTGTAATACTAATTACAGCACCAAAAATGAAGGATCTGACAATTCATCTCAATGTATTTTCTACTGTCCTGATGGATATGAAGTCAAGTCAGCAGAAGATAAAACATGTCAAATCTGTCCACGTGGAACGTACAGGAGTAACACTGGAAGTGAAAGATTTTCTCCTTGTCAGAACTGTACACAAAATACAACTGATTATCCAGGGTCTAAAACAGAAACTGAATGCAACATACCAATCTGCACTTTAGGTCAGATTATTGTGAACAACAGCTGCATGGACTGTCCAGTTGATACATATCAAAATATTACATTGCCTGATTCCAAGACTGTATGTAAAAATTGCAGTAGTGGGTTAGGTACTAATTCATCAAAGTCATCTGCAGAATCAGACTGCAAGTCTGTTTGTCCTGAAGGACAACAGTTTAACGAGACTAGTAACTCATGTAAACTGTGTCCACAAGGATACTGGAAGAACAGCACTATGAGGTTTGAAAACTGCAAAAAATGTCAAGACAGTTATACTACTTCTGGAGAAGGTGCAACTGATTCTAGCAATTGTTCCTTAAGAGATTGTCCAGCTGGAACAAAAATAAGTAATGACACTTGTGTACCTTGTCCTTATGGAGAATACCAGGATGTTCCTAGACAATATGACTGCAAACCATGTGGAACAAACCTTAATACATCAGATACAGGAGCTTCCAGTAAAGATCAATGCACTATCTCATGTAAACCAGGTTATGAGGGACCAAATGGGAAATGTGTGTCTTGTAAAGATGATTTTGTCAAAAGTTTTAATGGCAATGGAAAATGTGAACAATGTACTAACAACCAGACATCCAATGATAACCATACAGACTGTATAGGTTCTATGTTTTGTGCCAGAGGAGTTGAATATCTGAACACATCTCAACAGTGTTCTTTGTGTCAAATTGGTTTTTATAAGAGTGTTCGAGGTAATACTGTTTGTAACCCTTGTCCTGGAAATAAAACTACAGCTAGCACTGGATCACAATCAGAAAAAGATTGCAGTATTTTGTATTGTCTTCCAGGATTTTATGGTTTATCTGAATCATGTCACCCATGTGATGTTGGTAGCTACAAGTCCAAGTCTGGCAATGACAACTGCACTTTGTGTAGTGAAAATTATACAACAAGTAGTCAAGCTTCTACAGATGAATCAGACTGTTCAGTTGTTGTGTGTAATGCTGGGTCATACAGAGAAAATAACACATGTTATCTGTGTCCAAAAGGCCAGTACCAGCCTGAGCGTGGAATGACATCCTGCATACATTGTTCTGGAGATAATTTTACTACTGAAAATGAAGGATCAGTCAATGAAACTCAGTGTATTAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGCGTGTGTTTCTTAA

Transcript

CsqKR_Scaf247_13.34

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR052071	Family	Signal peptide, CUB and EGF-like domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24046	SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf247_13.34 global RNA-seq network