Gene detail

Detailed information of CsqKR_Scaf201_3.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf201_3.13	FIBRILLIN-RELATED	chr11	4094044	4103321	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf201_3.13

ATGATGGAAATAAATGCAGATAACTTCACCTTCGTTCTGCAAGGACGCACTGGACGGATGGAAACACAGAAGGGTCTGGTCAACGCCACAGTGTTCACAGCATTTTCAGCAAGCAACAGCGATGGGGGAAAACTGCATGTTGAAATGGATAGAACTAAAACAGAACTTGTTATATATGGAAATGGCAGGGATTACACTGCTTACTATGCAAGAAATTACAATTTTCCAGTCGTTACACCCGAACTTTTATTAGAAAAGGTTGGCAACTCATCAGTCGTTGCAACATTCTCCAACAAAATAACTTTGAATATCACACTGAGCTTGAAAGTGTTGACCATATCTGTGGCTGTGCCAGAGATATACAATGGACTTCCTGTTGGTCTCCTTGGCAACTTTAATGGTAATCCAGATGATGATTTCAAAAAGAAAACTGGAGAACAGCTGCAATCCACAGCCACTGAACGAGAATTATTTGACATGGGACAGACATGGCAAATACCACTGAATAGCTCGGCATCAACAATGTTCTACCAACCTGGATACTCCCCTTCTGACTTCGTTGATCCATCATTTCAACCAGTTTTCACCGATGAAGCCACACCTGAGCAGAGAAACCAGGCGATACAAATATGTGGAAGTGATTTAAAGGCCTGCATCTATGATTACATCGTTACTGGAGATAAGGACTTTGCTCTTCAAACAAAAGATGTCCTTGTACAGAGTGACACCAGGAAAGTTATCAATGAAAATGAAGCTCCATACATTAATGGTACAACTGTTGTGAATGCTTTGATTGGGAGTAACATCACCCTGCAATTCACTGCGTTTGATGACAATACAACATCGCCAACCTTTGTTCTTTTGGATCAGCCAGACTACAGCTTCACATTTGACAATCAGACTGGCACTGCTGTGTGGTTGCCAGTAAATACCACACCCGTAGCAATCAGTTTGACAGCTATGGATAACGCAGGATTGCAAGCAGCACCTCTAGAGGTGACAATCATGTTGTGTACTGGGTGTTCAGCTCATGGAACCTGTGACTACACCACCCCACGAACTGTAGCATCTTCTGCAGCTGATCAGAAGTTCCAGATAGCAGTTTGTAATTGTAATACTGGCTGGGCAGGTGAGGAATGTAACCAGAACTTCAACTCTTGTATTGAGTTTCCCTGTGCTATTGGACAAATCTGCACTGACTTGAGCCCTGATGAAGAAGAAGTGCGAGGTGTTGGTTACAACTGTTCTGCATGTTCTCCTGGCTTTGAAGCCAATGACAGAAAGTGCCAGGATATTGACGAATGCCAGAAATCAAATATTTGCCCTGAAAATTCCACCTGTGAGAATTCCATTAGTTCTTACAAATGTGTTTGTAACTCAGGATTTCGCATGAGCAGATCAGGACAGTGTATTGACATTGATGAATGCATAGAACAGAGTTACAACTGTTCACAAGTTTGTAACAATTTTGTTGGTGGTTACTCCTGCAGCTGTTTTGATGGTTACTCCCTGTGGACAGACAATGCATACTGTAACCAAACAACAGATATTAATGAATGCAGCATGAACTTGTGTGCACAGAAGTGCACAGACAGTGAAGGCAGTTACACGTGTTCGTGTTATGATGGGTTCCGCTTGGCTGCTGATAAACTGGCCTGCGAACAATGTCCTTTTCCTCAGTATGGCCCCAGTTGTAGTTTAACCTGCAACTGCCACGGCCACGCCTCCAGCTGTGACCCAGTGCACGGGTGTGTCTGTGTGACAGGATGGGTGGGCACTAACTGCACACAAGATATTGACGAGTGTACACAGTCGCCAGGCATTTGTGGCAATCGATTCATCTGTACCAACACTGAAGGCTCTTACCAGTGTACATGTCCAAGTGGTTTCGAAAATAATGGCACGGAATGTGTAGATATTGATGAATGTGGCTCTGGTTTGGACAACTGCACGCAGGACTGCACCAACATCGTTGGATCGTTTATATGTTCATGCAGAGAAGGCTACAGGAAAGAGGGATTTAGCAACTGCATTGGTGAGATTAATGAACTACACTGA

Transcript

CsqKR_Scaf201_3.13

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00094	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001846	Domain	von Willebrand factor, type D domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf201_3.13 global RNA-seq network