Gene detail

Detailed information of CsqKR_Scaf1_49.34 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf1_49.34	RRNA METHYLTRANSFERASE 3,	chr7	14882952	14887614	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf1_49.34

AGGGTGTGAGAAACATCTACTACTCGTTGTCGTAACTAATGATTCGGCTGTTGTCGCTTTTCTCCGAATACAAGTATGCTCAAAATGTCTGCGCTCGCGATTAAAGGAAAAACGATTCTTTCTTCAAATTGTAAAGCTTTTCTATGTAGAACAATGAAAACAATAAAGACAAAGATATCTGATAAAAGTTTTCATATCAATAATTCTGAAAGAACAACACATTCAAAAACAAGAGAAAACCCCACAGGTTTTGAAATATTAAAAGATGGTGATAAACGATTTGGATCTGTGGTAATTGGAGCCAAATCAAGAAAAGAGAGAAGAAAAAGGCAGATCATTCTGCTTGAAGGACATAGACTCATTGCAGATGCTATCAGGTCCGGAGCAAATGCTAAATGCATATACTTCAGTCAGATTGACATTCTAAACAGACTGCCTCTTGATCTGATTGATGCTGCTCTCTATAAGGTTCATTATCAACACATGAAGCTTTGGTCTGATGTTGAAACGCCACCTGGTATTATGGGAATATTTGAAATGCCAAAAGAAGGATCTATAAGTATACCAGAGAATGCTTTACCAGTAACTGTGATCTGTGATAACATTCGTGATCCTGGTAACATGGGGACACTCATTAGAACAGCTGCAGCAGTTAGTTGTCAGAAGATCCTTACTACTAAAGGATGTGTGGATGTCTGGGATCCTAAAGTTCTTCGAGCAGGAATGGGCAGTCACTTCCACATACCAATTTTCAGTAGTCTTTCATGGGATCAGCTGATCAATTCCATGTCCAGTGACATGCAGATTCTAGTTGCCGACACAGATTACAATATTCAGAGAAGAGACCAGCAGATAGTGGATTCAGATTTGCTACTATCTTCTGAAGATAGCTTTTATGAAAATGATGAAACAGACAGTGACTCTGATGACAAAACGAATTTGGACAAATACAAAAAAGTTCCATTACCTGCATCAGTTTACCACCAGATAAAATATCAGAATCAAAACATTGTTCTCATTATTGGAGGTGAAACACATGGAATTAGTGTTGAAGCAAAGAAATTAGCATTTGATTTCTATGGACAGTATATAACCATTCCTTTGTCATCATTTGTTAACAGCTTAAACTGCTCAGTAGCCAGCAGTATTATTTTGTATGAAATACACAGACAGCTGAAATTTTCAGAAAGAGATAATTAAAATAAGTTCTGTTTAAATCTGACTTACTTTTTTTAATTTTTTTTTTTATAAGGATTTTATTTTAAATTCTAAACATTCATTTCCTATTTTACAAATTAATTTTTTTTTTTCAAATTCCATCCTGGTTATTTCTTCTCTGGATGAATGTAATGTTTTTTTTGTGTCTCTAAGGGACTGTATCAAATAGCGTATTTTTAAGGAAACAAATTAACTTATCAATTTTAAGACCCACATTCTCCTTTACTCTGAATGTTGCACAACCGAAAATAAAAACCTGTAAAATGAAACGTCAATATATTAATTTTGAAGTTTTAGTTGCTTGTCAATGATTTTGACATTTTCTGCATTGGTAAACATTCAGGTTTGTGACCTCACTGGACACATTATATTTTTGTTTCATAGTAGTGAATACTACTTGAATGAACATCATGCAACATTCCATCATTTGTGTCATTTTGCATGTAAGTGATATATATAATATTTTTGTCCAAATATGTTGAAAAACCATGGGTAAAATTAAAGAAATTTATTTTTCATCATAGCAATATATTTTTGGTATCAGTACGTTAATGATTAAAATCCCTAACTAAATTACTGTATCAGATTATGAATATATGCATGTAGGCAGTGCAAAACATTTCTGAAATAAAATCAAATAAGCAGTTGCCTTGTATTTTTGAAAAGTATAAATTCATAGGAACATGAATTAAGGATTGAACTGTTTTTGAATTAATTTATGACATTAGATTTAATATATCCCTATTTTAAAAACTGTACATGCAGTTAAATTGATTTAATATTGAAAATAGTCAAAAACAAATATGATTTAAAATGCAACCATGCTATTATTAATAGTATTAAAAATCAATATATAAATGTAGTTAATAATGAAATAACAATTTTAGAGCAAGGAAATGAAAAACGGTAAATGTTTTTTTTTTTTTTTTTTTTATCACGATTTAATAAAAAATCTAAAACAATTTAAAGCCCAGAGGTATAGACTTTTATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTAAGAACAAAGAAAGTGATTGTTAAAAATTACAAAAAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00588	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001537	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR029026	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR029064	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR051259	Family	Ribosomal RNA Methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43191	RRNA METHYLTRANSFERASE 3,	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf1_49.34 global RNA-seq network