Gene detail

Detailed information of CsqKR_Scaf1_49.19 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf1_49.19	CDC45-RELATED PROTEIN	chr7	14867131	14876668	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf1_49.19

TCATAATTGATTTTATTATATAAATTTTTAATTTTAATTTTTTCTTTTTAAATAATTTGTTAAAACACACACGCAGTTTACAGTGGGGGAAACAACCAAAGAAAATTGTTGCGGAAAGCGCGGTAAAGTTGATTTTGTAAAATTGTTAAACCAGAAATGTTTGTGAAAGATCTGAAACAGGGTTTCTACGATGCCATACAACACCAGAGAGTTCTTGTTCTGGTGTCATTTGAAGTTGACGCTCTGTGTGCTTGTAAAATACTGCAGTACTTGTTTCAGTGTGATCATATTCTGTACACGATTGTGCCCATCACTGGATATGAAGATCTAGAAAGAGCCTTTGTGGAAAACACAGAAAGGGTAAAACATGTTGTCTTGATCAACTGTGGTGCTACAGTAGACATTGTAGAAATGCTGCAACCAGAAGAATACATTCGATTTTACATATGTGACAGTCACAGACCTGTAGATATTCACAACGTATACAATGCAGTTCAGGTGAAACTGTTGATGAAGCAAGAGGAATTCACTGACATACCTGAATATGACACAGTGTTTAGAGATGATGAGTCAAATGATGAATCTGATGATAGTGATGCCAGTAATCCAGGAAAACGAAAAAAACTTGATGAAGTTGCTCTAGACAGACGAAGAGAAAAACGATTATGGCATGAAGACAGGACTAAAATACTGTTTGACTATTCTAAGTTTACCTATTATGGAACGTCAGCTGCTCTGCTTATGTTTGAGTTAGCTTGGAAAATGTCTAAAGATACCAATGACTTACTATGGTTGTCAGTGATAGGAGTTTCAGATCAGTATGCTCAGTTTAAAACAACAAGAGAGAAATATATGGAAGACATCATTGCTCTGCAATCTCATGTGTCCAGACATAACCACAGAGCAGATGATGAGGAAAACACGCAGTCCATAAACTGTTTGAAGGTTGTGTTTGATGAAGAGTTGCATTTATCACTTTACCGACACTGGTCACTGTTTGACAGTTTGTGTCATTCTATCAACACTGCTTGCAAGTTCAAGGTGTGGACGCTGAAAGGACAGAAGCGGTTGTATGAATTCCTTGCAGAAATGGGATTGCCATTAAATCAGTGCAAGCAGAAATTTACATCAATGGACACTGAAATAAAAGGAAACATTAAGTCAATGATGCAGGAACACATGACTAAATATGGCCTTGTAATGCAGGATGTTGTTTTTCCATCATTTTATGCACAGTATGGTTTCAAAAACAAATTGTGTGCAACAGATGCAGTGTATGCTTGTGGAGCAGCATTAGAATCTGTGGAAAATGGAAAATTGCCTACAGATAATTTCCTGAATGCCTTAGATATTTTACAAAGATCAAATGTGTCAGCTTTAGAAAAGGGTCTGGAAAGTGCCAAAAAGCAGCTGAAAGCAACAGTGACTCAAGTGCAGATATTTTTGGACATGCATCAAGTAATTTCAGCTGGACCATTTCTTTATGCATTTATCCAAGAGGGAACAGCTGATGTGAAATATTTTGCAAAACCACAGTGTCTAATGAGACTGGCCAGATTTACACTAGAAGCATACTGCTGTATGAACCGCAGTAAACGAGCAAAAAGCTTGCCTATGATAATTGGTGTTCCCAATGATCTGCAAGAAGGAACAACACTGATTATAGGAATACCGCCATTAGACTTGGATGATGAAAGAAAAAATTTTTTCGGCAAAGCATTTGAACAGGCAGCTTCAAATACAAACACCCGAACACGCCATGACAACTTTGATTCTCATATCATAGAAATGAAAACTGAAGACAGAAGCAAATTCTTTGATGTGTTAATCAGCTTACTGCAGTAGTTTTTGTTTAGATGTGAAGAAAGTGCCAGTCAAATCCCATTGTATATATATTTATAAATTTATTTATTGCTGAAAATAATAGATGAAATATTAATTGGGATATTATGATTTGTTTAAAGCACATTATTTTTTTTATCTTCCATGTGACAAGCACTCCAGTTTTTCAGGAATTCAGGCCAAATGCATATAGAAGTGGAAACTGGATATTAATAATTCTTATATTCCTGTTTGTGGACAAATTAATTTAAATTGTACATTGTGACATTCAAATGTTGTTTGAATATATTTCTCAGAGAGAAATGAATTGGAACTAAATGAGTGAAATAAAATATTTTAAAACAATTTCTTCTTACATTTTGAATGCACTGCATTTTCATGAATTTTTTTGGTTTGTTAATGTTTATTAATAAAAACTATAACAATAAAAAGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02724	CDC45	CDC45-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003874	Family	CDC45 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10507	CDC45-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000727	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan
GO:0031261	Cellular Component	DNA replication preinitiation complex	Interproscan
GO:1902977	Biological Process	mitotic DNA replication preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf1_49.19 global RNA-seq network