Gene detail

Detailed information of CsqKR_Scaf193_10.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf193_10.7	CELL DIVISION CYCLE 16,23,27	chr4	987289	999912	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf193_10.7

TGAACAGAATATAACATGGCGACTAACGAAAGATGATCTGTTATGTTTATTTCAATTATACAGTTTATAATAGCTATTACATGGAACATAGCGGGTTGTTTTTAGTTTTAAAGAAATAATGTTACTTCAGGAACCAGTTCAGGCTGCGATCTGGGATGCTCTCAATCACTATGCTTACCAGGATGCAACATTTCTAGCTGAAAGACTGTACGCTGAAGTTTCCAGTGATGATGCTTTATTTCTTCTGGCAACATGTTACTATCGGTCAGGCTATCCAGTTCAGGCTTACAAACTGTTACAAAAGAAAGGATGCCACACTCCACAGTGTAGATTTCTCATGGCCCGATGTTGTGTTGACATTAACAAATCATCTGAGGCTGAAGATTTGTTATCTGGCAGTGTTCTGACTAAAGTGAAGTCTCTTGATGAGATAGAGTTGGAGTTTGGTAGCATGGCTTGTCATGTTTTTGCTCTGCTGGGAAGACTCTACAGTAAAACAGAAAGGCCACAGAAAGCCACAGCTTGTTTCAAGAAAAGCCTTTATTTGAATCCTTTATTATGGAAATCTTACGAAAGACTATGCCAGATGGGTGAGAAAATAGATCCTTGTGACGTGTTTCAAGTACCATCTCAGTTGTGCTCACAGCCATTACAAACCCAGCAGCAACCACAGCATTCAACACAACCATCAGTACCTCAGTCTGTGTTAGATGTTTTATCTCCAATATCTGAGGCCTTGACTCCATCATCAAATGAAGTAAATATGCAGTTGCCAGTTCCACAAGTCATAAGTATGAACACAACTCCAGAAAATCAGGAGACTCCTATGATAGAAAAGTGTCTAACCAGTGCTCCTAAAGTATGTCGTACAAAGCGTAATTTGTCCAAGCCATGTCATGCTCTGTTTCTTAGTCCAATGACTCCTAGTTTTGGAATTCTGCCCTGGAAACTCCAAGTCCGACAATGGAACTCAATATAATGCCTTTCATAACTCCCAGTCCACTGATGCACAGTGATAACCAGCTGAATGATGCCAAGGCACCCAAAAAACGGCCTTCTACACGAAAAGGTCCAAATATGAACCCAATGAGTAAACCTCCAGTTTTTGGTATCAATACAAACACAAGAGATGGTCCAAAACCCCTTGTAGGAAATATTCCTAATGTCAGAAGAAGTTCTCGGTTATTTGGAAATTCAAACTCTAGTTCAGTGAAGGAAAACAATAAAAGCCCTGAGAAATCAAGGTTTGCGAGTCCTAAAGCAGTTAATAGAAAATGTAAGCCTCGTATCAGTAAATCACAACAGGAGCTGAATGAGATAAATAAAAGTGATGTTCATGTTGACACCAAACCAGCGACTCAGCCAGAACTGCCAACAGTTTCACAGCTCTTACAGATGCAACACCAGTCTCTGTCTGGCCTTCTGAATCTGTTACAACAGCTGGGGAAAGGGTATATGTACCTATCTCAGTATGAATGTCGCAAGGCAATAGAAGTTTTTTCTGACCTGCCAGAACATCAGTACTACACAGGCTGGGTACTCACACATCTGGGGCGATCTCACTTTGAAGGAGCAGATTACAAGAAGGCAGAAAAAGTATTTGAAGAACTTCGCAGGATGGAGCCATACTACATTAAGGGTATGGAAACATACAGCACCACCTTGTGGCATCTACAGAGGGAAGTAGAATTATCTGTCCTTGCTCAGGAGCTAACAGATTTGGATAAACAGTCTCCAGAAGCTTGGTGTGCCACTGGAAATTGCTTTAGCTTACAGAAAGAACATGATGTTGCCATTAAATTCTTCCAAAGAGCAATTCAGGTAGATCCAAATTTTGCATATGCATATACTCTGCTGGGACATGAGTATGTGTTCACTGAAGAACTGGACAAAGCTCTCGCATGTTTTAGAAATGCAATACGAGTTGACACCCGACATTACAATGCTTGGTATGGTGTAGGAATGATTTACTATAAACAAGAAAAATTTAGTTTTGCTGAAGTTCACTTTAGGAAAGCACTGAGCATCAATCCAAACAGTTCAGCTTTACTGTGTCACATTGGTGTGGTTCAGCATGCACAACAGAAGTCTGACTCTGCTCTGACCACACTGGACCGAGCCATTGCTGCTGACCCTTGGAATCCACTGTGCAAGTTTCACAGAGCTTCAATTTTGTTTGCTAATGATAAACACAAGGATGCACTTCAGGAGCTGGAGGAGCTGAAGACTATCATTCCTAAAGAATCTCTTGTCTATTTCTTAATAGGAAAGGTCCATAAGAAATTGGGTAACACTCACTTGGCTTTAATGAATTTTTCCTGGGCCATGGATCTTGATCCCAAAGGTATCAACAATCAGATCAAGGAGGCGATAGACAAGCGATATGTGACCGAGGATGATGACCCTTTAGTTCACCTGAACGAAACGGCAATAGAAGAAGGGCCCAGTGGAGAAGCGTCACAGAGTAATTTATCTGATCCAGATCTGCAGGCGATTGAGAGTGATGAGAGTTTGTGACAAAACATTAACAGCAGCATGGTTCGGCATATGAATATCACGTAAAAGTAACTGATTTTGTGATACAAAAATCCAGTTTTTAAAATTTCTCAATGCATAGCAAAATTAGCCCTTTATTTCTGTAATTAACATGAATTTGTCTCTGTCCTGATACTAAAGGAAGTTTTATATACTTTAAACATGTATGACATTATTATTTTGATGAACAATAAATATTTATGTAAGATAGAGTCATATATAAGGAAACTGTATAATACATGTATGCATATACAAACACACACATGCACACACACACACACACACACACACACACACACACATATACATAAAATAGTTTCAGATATTAATACAATCACATTATGAAATGATTGGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF07719	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013105	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12558	CELL DIVISION CYCLE 16,23,27	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007091	Biological Process	metaphase/anaphase transition of mitotic cell cycle	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031145	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0051301	Biological Process	cell division	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf193_10.7 global RNA-seq network