Gene detail

Detailed information of CsqKR_Scaf192_10.29 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf192_10.29	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	chr10	8398142	8401610	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf192_10.29

TCCCATGAAGCTTTGCGTCAGCTGCCGCCATCTTCGTACGAGAAAACCCCTGGAAAGGCAAAGTAAGGCTTGATGATTTCGGAATACTGAATTACTGGATATCAAGCATCCTCCAAACAATTGGCAAAGATGAGTCCATATATTCAGGTTGCCGAGGAGGAGGGGGACGAACCGATGGAAGTGCCAGTGGAGGATGACGGAACTTTGTTGCTTACCACCCTAGCCGCGCAGTTCCCTGGGTCGTGTGGATTGAAATACCGAAACCCCGATACTGGTTCTATGAGGGGGATCCGTCTTTCAGACGGTCGTCTTTACCCACCAGATTGTGATTGGGGTGGTTATGTTTTCATTGCAGTTTTTCCGAAGGCTGAAAATAAAAGACGAGTGGATGAAGCCGCAGATAATATGGCACTGAAACCAAAACGAATCAATGAAAAACAACGTTGTAGTGATCTGATAGTACTGGGTCTGCCATGGAAAAGTAATGAAGAAGACCTCAAAAAATATTTTCTGCAGTTTGGGGAACTTCTTATGGTCCAGGTTAAAAAAGATCCCAAAACTGGACAGTCAAAAGGCTTTGGTTTTGTCAGATTTGCTGACTATGAAGCTCAGTTCAAATGCATTTCTCAAAGGCATATGATTGATGGACGATGGTGTGATGTCCGAATTCCCAACTCAAAGGAAGGAGCCCAACAGATGATGAACCGCAAGGTCTTTGTTGGTCGCTGTACAGAGGACATGACATCTGATGACTTGCGACATCACTTCAGCAAATATGGTGAAGTGGTTGATGTCTTTATTCCAAAACCATTTCGAGCTTTTGCCTTTGTAACCTTTGCCGATCCGGATATAGCCCAGTCTCTGTGTGGTGAGGACCACATAATCAAGGGAGCCAGTGTACACATCAGTGGGGCAGCTCCAAAGAATAATGAAAAGGATCGCAGGCTTGGCTTGAATCACACACCTTTTGGCGCTTTTGGTCAAGGCTACAGTCACAGTTCATGGGCCCCAGGAACACGAGGAACAAACCAGTCAGTGGCCAGTCATGGAACAGCTCTGCAGGGAAGTCTCAACAACAATCTTGGTTTAGGAAATTTGGGTCTTGGAGCTTTACAGCTGAATCATGCAATGTTAGCAGCTGCTCAGGCTGTTCTCTCTGGTCAGGGTGGGTGGGGGCCTCTTGGATTGACCAATCAGGGTGGTAGTGCTAGTAGTGGGGACAACCAAACTAATACAGCAAATAACAATGCAGGTTTCAGCACAATTGGCAATGGAACAAGTTGTGCAGGAAATGGGGGTAGCTTTCTAGGGTGGGGTAGTTCTCAGACTACAGATGCTCCCTCTCACAGTCCCGGTCATGTTGGTGGGTGGGGTTCACAGTCAAAAACGGGAACAGGATGGAATTAGGTGTGGAAGGTGTGAAAGTTTGAGGGTTATTTTTGTTTTGCAACTCATTGGGTACCTGCCATTGTACATAGTCAAATAAACCACAGTGCATCATTTCATTTTGCTAAGACAGAACAATATGTATTTGGCATGGATGTAGTAAAGCTGTTTCTATAGAGACATTTAAATAGCCTACTGTCTTGAAGTTTTATAAATCTGTGATATTGGTAGAGAGGGTGACAAATTTAAATGGTGCACGGCACAAGAAAAAATATTAAATTACGAAAATGGGTTCTTTTTTTTCTTTCTTTTTTTTACACTGTGATGTATTTGACTGTGTTCACTATTGTTTAAATCACATTGATCTGTAGTTGTGTATGTTTTTCTCCTACCCTTGGCTGCTTCAGTGTAATCCATGCAGCAGCAACTTTACTGATCAAATGTTCTCTCTTTAAGATGGACTTATCTCCCTTTGCTCCCAATACAATTATTATACTCAAAAAAGAAAAAGTTTTCTTCATTTATATAAATTCTTAAAAAGTAACATTGTACAATACTAAAACAGAATATTTATCCTAAGTTATAGTTTAAATGAAATTTAAAATTTCTATCTAGTAAAACTGCATTTTATTACTTTTAAATAATGTTTAAAAAAGAAGTCATCAAAATACCTGAATATAGTTTATTATTTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF18694	TDP43_N	TAR DNA-binding protein 43, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041105	Domain	TAR DNA-binding protein 43, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf192_10.29 global RNA-seq network