Gene detail

Detailed information of CsqKR_Scaf185_12.24 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf185_12.24	BANK1/PIK3AP1 FAMILY MEMBER	chr15	21304356	21312570	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf185_12.24

ATGCACGAACGTAACATATCACTAACCTCCCAGAGGTTTGACTCTGAAAACAAACAGACTCTAGAAACTCGAGGAAATCAGTCAGCAATGGCTTCTTCAGACCGCCCAGCCAGCATGAAGAGGCACTGTACAATCATCCACACTGATGACGCTGTTCAGTGGTGCGAATACATCAAGAAACTGTTCGCCAAAGACAAACGACAACATTTAACCATAGACAGTATCAACATAGATGAACTGGACTACGAAAACCCACCACAAATAGAGGCTGCAATGAAAAACTCTTATCTCGTGGTAATCCTCACATCTCCGGACATGAAGACTTTCATTTTAGAAAAATCTTCCTGGTTTGTGCCAATGATGAGCAGGGTTACTGTTGGCACCTCCCTGGTCTTTCTCTTGTGTTATGTCACGATCGAAGACTTTCAGCAAACAATCAGAGGACCGTTCGCTCCTCTGGCCGATATAAAGTGTGATACGATCACTTCTGATCCCACAGTTAATAGAAACATTGTGGCGGATTATATTGAAATAATTGACCAGAATGAACGCCTCAGCAAACGACCAAAACCAAAGCAAAGAAAGAAGCTAATTCCAGCTCCTGAGACTTCCATTATTAAAGCCGTTTCTCCTTGCAAAGTTCACGGGGCCAAAGAACATGTTCTCATTGCCTCGTCCTCTCCTTTGGAAGGAGTCATTGAAGTGGGTTTCGTTGACAGCCCAGAAAAATACGACACAAAAAGCATAAACCCTTACACCATCGGCTACCTGATACAGGTGTTCAAAGTGAAAGACAAAGACTCGCTGGAACAGAAATTGGTGGACATGATGGAAAAGAGTATGACTGATGACAACAGTCTGGGTGTTCTCTTTGAAGAAATACAAGCACCATTTCTGGAAGGTAATACAAAGAGTGAAGCAGAAATCCCCACTCTTCTTCATTTTGCTGCTGCTAACGGACTTTCAGAATTCTGCTCATTCTTGCTCGATGTTCCTGGTTCTGTCGCAGCTTTCCAGATAGAAAATAAACACGGAATGGACCCTTCAGATTTAGCTGAAAGCAAAGGTCATCTTGAATTGGCAGAACACATCAGAAATTACATGCAAACAAAAGCAGTGGTGACTACATGCAACTGGTACCTTGAAATGTCTAGTGGAGGAAAGAAAGTGAACACAGAATCAGACTACATGAAAATGCATTCAATAGTAGAAAAAGAAGAAGACCCATACACGACAGTGACTGAACTTAAACAAGAAATGCAGGACTATAAAACAATGAAAGAACGTACAGAAAGGAAAACGAAAAAACTGCCGCCCATACCTCCACGAGCTCGCGCTAACACAGAACCAACACCTTCAAACTCAGAGATTCCGACAGAAAAAAGAAGAAACGCTGCTGAATTTATGGGTTTAACCCGAAAAGACAGCATTGAGGCACCCGCAGCGTTTGGTTCTTCTGGCCAGGCTGAGCTCATTCAGATAATGGAATCTGTGAAAAGAGGAGATTTCAACATGGACGACGCAAATTTGCTATTCAACGACTGGAAGAACAAAAACAAAGGGGAAGAATCGAATTCGTTCAAGAAAAAACAAGAAAAGTTGAACCGGATGCGTCAACATTACCCGACAATTTTCCGACTAACAGAGCAAGCTGCCGATGAAGTTTATAGTCGTACTGGAAAAGGTCTTCTACATCGTATGCTGTCAAAGAAACCCAGGAAGAAGGGATGTACCCAGATATCGGAGCCTTACCAGGTTAGGTCAAGCAAGTCAGTAACAAGTCTGAAGGAATCTGAGAGATCAAGTTCCTCCAGTACATCATCACGCGAAAGTAACAACAGCCTCACTGAAGTATTTTACAGCGACAGCGATCACAGTGACGAAGATCCATATGTTGTAACTAGAAGAAAATCCAGTTCCACTAGCACACTAACAGTAAGTTTAAAACATCGAGAACGAATGTCCTCCGCTTCCTCCAAGAACATGCAGAAAGTGAATGTTTTCGTGTTCCCTCAAGAACATACAGAAAGTGAATGTGCTCATGATCCCGCTAGAACAGACAGAATATCAATAGATTCTTGTAACCTCTAG

Transcript

CsqKR_Scaf185_12.24

AAAAAAAAAAAAAAAAAAAAAAAATACAACTGCGCTGTAAATTCGGTGGACCATTCAAAACAACCTGAAACATGATATCTGTCTGACCTACCTTTCACGGCACACAGAGGACTTTGAACAAGGAAGTAGTTCGAAGGGGCATCCCCTCAGCGTTCAGGTATATTAACATATCTATAGACCGAGAACGTCATTCGCTGTTGAGATTTAGGACTGTAAACTTCATACGCTCTTGAAATGCACGAACGTAACATATCACTAACCTCCCAGAGGTTTGACTCTGAAAACAAACAGACTCTAGAAACTCGAGGAAATCAGTCAGCAATGGCTTCTTCAGACCGCCCAGCCAGCATGAAGAGGCACTGTACAATCATCCACACTGATGACGCTGTTCAGTGGTGCGAATACATCAAGAAACTGTTCGCCAAAGACAAACGACAACATTTAACCATAGACAGTATCAACATAGATGAACTGGACTACGAAAACCCACCACAAATAGAGGCTGCAATGAAAAACTCTTATCTCGTGGTAATCCTCACATCTCCGGACATGAAGACTTTCATTTTAGAAAAATCTTCCTGGTTTGTGCCAATGATGAGCAGGGTTACTGTTGGCACCTCCCTGGTCTTTCTCTTGTGTTATGTCACGATCGAAGACTTTCAGCAAACAATCAGAGGACCGTTCGCTCCTCTGGCCGATATAAAGTGTGATACGATCACTTCTGATCCCACAGTTAATAGAAACATTGTGGCGGATTATATTGAAATAATTGACCAGAATGAACGCCTCAGCAAACGACCAAAACCAAAGCAAAGAAAGAAGCTAATTCCAGCTCCTGAGACTTCCATTATTAAAGCCGTTTCTCCTTGCAAAGTTCACGGGGCCAAAGAACATGTTCTCATTGCCTCGTCCTCTCCTTTGGAAGGAGTCATTGAAGTGGGTTTCGTTGACAGCCCAGAAAAATACGACACAAAAAGCATAAACCCTTACACCATCGGCTACCTGATACAGGTGTTCAAAGTGAAAGACAAAGACTCGCTGGAACAGAAATTGGTGGACATGATGGAAAAGAGTATGACTGATGACAACAGTCTGGGTGTTCTCTTTGAAGAAATACAAGCACCATTTCTGGAAGGTAATACAAAGAGTGAAGCAGAAATCCCCACTCTTCTTCATTTTGCTGCTGCTAACGGACTTTCAGAATTCTGCTCATTCTTGCTCGATGTTCCTGGTTCTGTCGCAGCTTTCCAGATAGAAAATAAACACGGAATGGACCCTTCAGATTTAGCTGAAAGCAAAGGTCATCTTGAATTGGCAGAACACATCAGAAATTACATGCAAACAAAAGCAGTGGTGACTACATGCAACTGGTACCTTGAAATGTCTAGTGGAGGAAAGAAAGTGAACACAGAATCAGACTACATGAAAATGCATTCAATAGTAGAAAAAGAAGAAGACCCATACACGACAGTGACTGAACTTAAACAAGAAATGCAGGACTATAAAACAATGAAAGAACGTACAGAAAGGAAAACGAAAAAACTGCCGCCCATACCTCCACGAGCTCGCGCTAACACAGAACCAACACCTTCAAACTCAGAGATTCCGACAGAAAAAAGAAGAAACGCTGCTGAATTTATGGGTTTAACCCGAAAAGACAGCATTGAGGCACCCGCAGCGTTTGGTTCTTCTGGCCAGGCTGAGCTCATTCAGATAATGGAATCTGTGAAAAGAGGAGATTTCAACATGGACGACGCAAATTTGCTATTCAACGACTGGAAGAACAAAAACAAAGGGGAAGAATCGAATTCGTTCAAGAAAAAACAAGAAAAGTTGAACCGGATGCGTCAACATTACCCGACAATTTTCCGACTAACAGAGCAAGCTGCCGATGAAGTTTATAGTCGTACTGGAAAAGGTCTTCTACATCGTATGCTGTCAAAGAAACCCAGGAAGAAGGGATGTACCCAGATATCGGAGCCTTACCAGGTTAGGTCAAGCAAGTCAGTAACAAGTCTGAAGGAATCTGAGAGATCAAGTTCCTCCAGTACATCATCACGCGAAAGTAACAACAGCCTCACTGAAGTATTTTACAGCGACAGCGATCACAGTGACGAAGATCCATATGTTGTAACTAGAAGAAAATCCAGTTCCACTAGCACACTAACAGTAAGTTTAAAACATCGAGAACGAATGTCCTCCGCTTCCTCCAAGAACATGCAGAAAGTGAATGTTTTCGTGTTCCCTCAAGAACATACAGAAAGTGAATGTGCTCATGATCCCGCTAGAACAGACAGAATATCAATAGATTCTTGTAACCTCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052446	Family	B-cell PI3K Activation and Signaling Adapters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16267	BANK1/PIK3AP1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005068	Molecular Function	transmembrane receptor protein tyrosine kinase adaptor activity	Interproscan
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005104	Molecular Function	fibroblast growth factor receptor binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf185_12.24 global RNA-seq network