Gene detail

Detailed information of CsqKR_Scaf174_18.12 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf174_18.12	POLYCOMB GROUP PROTEIN	chr1	33579592	33591145	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf174_18.12

TTATTTATTCTGTGTGAAATGTGTTTTGGTTTTCTCTTCTTTTTTTGTCTTTTTTTTTTTTTTTTTGTCTTCAGATTATGATAAAAAAAAAATTATTAATTCATATAGGAGCCACTTAGTCCTAAATGCAATGAATTTAAAGTTGGTCAGAAACTGGAGGCTGTTGATCGTAAGAACACTCAGCTTATTTGCCCTGCTACAGTTGGAGCTATTAATGGTGATCAGATACATGTGACATTTGATGGATGGCGTGGTGCTTTTGATTATTGGTGTCGTTATGATTGCAGAGATATATTTCGAGTGAGATGGTGTGCTGACAGTGGTCATCCTTTGCAACCACCTGGCAAGAAAGGTTTGCCTCAGTACAAGATCAATAAATTAATGAAGCAACCAGAACAGCAACAACAGCCAGCATCTTCTCCACCAGCTGAGGTGGGTGATAGTCAACTACAAACAATGCCAGCAAGTCCTACAATTTCACCAGATAAACAGCAGCTGTCTCCAAGGGAAGCATCTTCTCCTGTGATAAATGTATCTGAACCAGACACTAGTTCCACATCTAGTTCTGCTACTGTTTGTGTATATGTAAATTCATCCTGCAATTGTGGAAGTTACCTCAGTCCTCGTCGAGTATCAGGGATGTCGCCCCAATATGGTCCGGGTTCCATAGTACGTGTTCTTCGTGAAGTTGTCCAGGCCTGTATTGACTGTGCAGTGCAGGAAAGAACAGTCTTCAACATGATCAAAGAAGGAAATGGAAAGGTTGTGGTAACAGCTAATCATGGTAATAAAACCAATACTAAACGAGTGATATCAGTTGAAAAAGTATCCAGCTTTTGGAGCTTCTTGGAACGACTGTCTGAAGATTTGGGATGCTGTGAAAATTTCTTCTCAAGTCAGCCAATGAAATCAGTCTGCTCAAAGTGCAACAGAAGCAAAGCCACTGAGGAAAGTCAGTTTGAATTCCCTGTTAGTGCACCAAGACGTCGATGGTCAACAGAATCTGGGGACAGCATAAAAACATCAAAACTGCCAAAACAAGCTAGACGGTTTTCAGCATACGAAGCTGAAGCAAGTTCAACAACAGAAGATGCAAGTATTCAGTCAAGAAAGGCTTCAGACAGTGTAAATGACTGGACAATAGAAGAAGTGATCAGCTTTCTTGCTGATACAGACACCAATCTTGGGCAGCATGCTGAATTATTTCGGAAACATGAAATTGATGGAAAAGCTTTATTACTGTTAAACAGTGAAATGATGATGAAGTACATGGGACTGAAGCTGGGACCAGTTCTCAAATTATGTAATATCATTGAAAAATTGAAAAAAGGATTTCCTTTGAAGTGAACAACAGATTTTACCTATTACATATACAAGAACTAGAGAATCTCAGCAGTGTTTCTTTTTACAGGAAAATCCTCTCATAGCAAAAACGTAAATTGATCAAAAACATTGAATAAATTAATATGTAATATTTTATTATTGTGTTAAATATGTGTCTAGAATATCCTGTATTTGACATGATAGGAAATATTATTTTTAATTTCATCCATTTCATTAGTTGTTAAAATTATGAAATGTGTAATATATTGCATAAAGTTAGCATTTATTAGCATACAGGAAAAGATAATTGTCAAAGGCTATTTTACTATAATTTGTGCATGAGTCTATTCCATGTCACTTCACCCAATAAGTAGAACCCAACCAATTCTAATTTTGACAGAAATTGGTACATATATTCTGTATTTTATAAAATAGGTGTTCAGACAAGAATAAACATATATACCAGTTGATTTTTTTAAACTGGAATCAATTTGATTGCAAATATCCATTTTATTGTGATGATTTGACATGGAATGATTAACATGCAAAAGTGTCATATATGTATAATATAGAAAATTACAGACTTCGTTCCTTCATGTTTCATTTCACTATACTTGACTGAACAATCTCAATTTAACATGCTTTGGATTTAGAAGTTAAAAATGTTATTTTAGACATAAAGCAGGTGGTTGAGTTGTCCTGAAACAGTAAATCCTATCTGTAATTCACACAGTGCTCAATACGTCATCGTATGGATGAATGACACCCAGGTATCCAGTACATTTGTACTCATCATCTGAAGCAAATCTTATTTCTTTGTAATCATTTATGGATCCTAATAATTATCTTTTTATATAACCTACCAGCAAGCAAGTTGCATTTTCGACCTTGGCAGATGTGATTTTTCTTCGTTGTCACCATTGATCTGGACAAAGGACTTTCTATCCACTTAAAATGTTTTATTTTAATGTACATATTTTAGTATTAATATTAAAATATTATCTTTTAAAACATTTTTTTCCAGCAAAAGTGGCATCATTTCCATGTGATTAGAATTACATATATTATTATAAAAATGATACAATTCTCAGTCTAGGGTATAATTACGAATTTTCATCCAAACATTCATTGCAGTTATACCCTAGCTATTCTACTTTTCCCTCAGTTCAAGACTCAAACTCTTCAGAAAATGCCTTCAAATCAGTTTTGGGTTTCCATTTTCATAATAAATGATATATGCACTGACTCCTGTAGCATTTAATAAGCTGTAAAATACAACCACCATATTTTCTAATATTTCTTGCAGTTGTAATTGGAGCTTATCTGATCAACGACATCAAGTCCACCTTTGGTCGAATCATAAAATGTCACAAATTCAGGTTTATATTGTCATGTAAAGTAGGAAGAAGCAAAACTTGTATTTTCGTTTTTGAAGGGACTGTAAGAAACTACAAAATGCAGTTTATCAATGCTTATAGTGGTTTTTTGAGACACAGAGCCCCATTTGTTCTTAGGCTACAGGTGCATTCATATGTTTGATGTATAGAGTATTTTTGGAAAGGTAGAGAAAATTGTTGCATCGCCATACAATTGTTTCAATAAGAAATTTAAAGAGAATAAAATGTTCTTGGGTATGTCAGACCAAGTGCAAAGTATGAAGGGTTAACTAGAATGATCTACGTATTTAATGGGGTCAGAATAGTTTTATACAATTCTATAGACACATCAACCCCAGAGTTTATGAAATGAGGCCATATGTTCAGATGATTTTAATATTTTTTTAAATAATTCAAAAGTAGCATTTTCGTTTATTGCCAGTAATATTGTTACCAAATACAGTGGTACCTTGACCTAGAGTTTAGCTCGTTCCATGATTGAGCTAATTTTCCCAAATGAAATTAATTGAAATACCATTAATCTGTTCCAGCCCTCCAAAATCCACCCCAATTTGTTGTAATGTGTTTTTGAATAAGAAAAATGTATTAATGAATAACATTGTATTATAACAAAATAAAAGAGAATGTAAAGAAATAAACTGGTTTTGTAAAGTGTACAAGGTTAGGGTTTCTCCATCTTTTCATGGGCAGAGGTCTGCAGCTTAGAAATTATTTAAATGCCTTTGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12140	SLED	SLED domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR021987	Domain	SLED domain	Interproscan
IPR038348	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR047531	Domain	Sex comb on midleg-like, SAM domain	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf174_18.12 global RNA-seq network