Gene detail

Detailed information of CsqKR_Scaf174_17.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf174_17.10	DIMETHYLADENOSINE TRANSFERASE	chr1	33431753	33442127	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf174_17.10

CTTTTTTTTTTTTTTTTTCTTTTTGGTTTAATTTATTTTGTTTTTGTTAAACTTCTGTTAAGACTTATTTTTATCACGTGTCTTGACCTGTGTCACATGACAGTTAAAATGGCGACATCCATAAGAAACCATGATAATATTTATTAGTATAGTTATTTTATCTGATTGACTGTTAGAAACACTTAATTCATCAAAGCAGATACGTATATGTTATACCATTCCCTTATCATTTTAAATTAGTTGATTAAAACATTTTGGGATTTCTGTTCTAATAAAAGGCTGCCAAAAATTAGTTTAAAGTTAACATAACTAAGACTGACTTCATTAATATATGTTGTACATACACATGCCAGATTCAAAATGGCATTATTTTTCTTTATTTATGGAAAAAGTCAAATGTTCCGTTTATTATTTACATCTGAACGAATTCGTTCCATACATTTAAAAAAATATATTAGAAATTTATTAATTGCAAATATTAAATTGACCAGTTCAGAGCACGAAGATCACTTAACAGTTTATCAGTCGATCACATCAGCAAAATTTCGGTCGTGTCATTATATATTAGACCGAAAATTGGCATCTTCAGTTGCTGATATTATTTTGAAGAACAGATCAAGCCAGAATAGCACTGTACTGGAAATAAACCCAGGTCCTGGCATTGTAACAAAGGAACTGTTTCACAATGGTGTGCAACATATTGTAGCTACAGATACCAAAGACCACTTTCTGTCCTTAATAAAGAAACATTTCCATAAAGAGATATCAGAAGGAAGGTTACACTGTTTTCAGTGGGACTGTTTTGGTCTCTGGCACAGAGACAGTAATAGTTCAAACTTTGACAAAGATTATAAAGAAAAAGAAATGGAAATTGTTGCCTCCTTGCAGCAGACAACACCAAAAAACCATGATGACATCTGTGTTACAGCTTTTGGAATTCTGAGTCGTGTCAAGGAAAGACCATTCCTTAACTATCTGCTGCTTAATTCTGGGATGTTAGAAGGATTGTTTTCTGTTGGGAGAATTGAATGGTTTCTCTTTGTGTCAGCAAAGATATATAAAACTGTTTTGTCTGGTAATGATCACTACAAAAACATAATGTCTTACAACAGCATGTCAGTTTTACTGTATCTATTGTTTGATATTGAGCATCATACTAAGGTTCCAGGTCATGCATTTAGCCCTCCTTTCCAGCTTATTAAAAGAAAGAAGAAAGAAGTAGTGGTTGGTGGTAAGCTTGTGAAGTATAACATGAAGTACTTGCTGCACATGAAACCAAAAAAGAACTTAGAAAGTATTCTGCCTGCTCTGGAAATATTCAAATTCTCACTTTTCTTGAAACAACTTTTTCATAAGAAGAGGATGCGATTAATACCCAAAATGGAAGAACTGATACCTGGTTGTGGAATTCACCTAATTCGTGCTGGTTACACAATGGTCCAAGAAGTGGGAGAAATCAGTCCAGAAGAGTTTCTATGGATTTACAAAGACATGCAGAGCTGGTCTGAGTATTATGATTCTGGGCTGTATTTTTACCTTATGGAACATACTGTACATGGTGGCATGGATGAGGAAACAGGAGGAGGTGACTGATGAAGAGAAATGTTCTGTTGTGGAGTAACATAATTAATATCTGTCACAGTTAAATATAAAGATTCCTAAGACATTGAAAGGAGCCTAATAACTAACAACATTTTTTTGAAAATCTAACAACTGTAAATTCAGATAAACAGTAACTGAATTACTGTGACTTTGCACTTTGTTATCTATAAAAATAAAATGTCTTATGGTGGGTATCATTTTAGTATACTTCCATTCAAACTTATTAGTACAGTTTTTAACTTCACCAAAACAGGTTGTTTGGCTTGGACAGTTTGCCTTTAAAAGTAATCAATATATACAAATGTTCTCCCACCACAAAAAAAAAAGAAGAAACAAATGTCTTTTTATCCAAAAAAAAATGTTAAGAAATAAAACTTAATTTTCAAAGGTTTAAATGTGTTTGAACTTGGATACTTTTCATTTGTGTTATTACTGTAAAATAGATTTACAGTGTGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00398	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001737	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11727	DIMETHYLADENOSINE TRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000179	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0006391	Biological Process	transcription initiation at mitochondrial promoter	Interproscan
GO:0031167	Biological Process	rRNA methylation	Interproscan
GO:0034246	Molecular Function	mitochondrial transcription factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf174_17.10 global RNA-seq network