Gene detail

Detailed information of CsqKR_Scaf173_27.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf173_27.13	ATP-DEPENDENT RNA HELICASE	chr7	3812616	3822930	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf173_27.13

TCCGCAGACAGTTGTTAGGTTCTACCATGTGCTTTGGTGATGTTGATTAAATTGTAAATAAAATATTTACATAATCATGTTCATATGTTGTGTTGTTTTAAAAGATTAACATGGGCAAAAATAAACGAGGTTATAACTGGAAGGCGAGACAACAAAGTCAAACTGTTGTCGACCATTCAGATGAAAAAAAGATTAAACTTGATGCAGCATGTCTTGTATCTAAAACAGTGGCACCAGGCTATGATGAAAGCAACAGTCTTGTGTTGCCATCAAAGAAACGAAAAACGGAGAAGAAAAAAGAAGTAGTTCACAGGGTGAAAAAACTTAGCAAAAAGGAGCGAAAGGCTTTGCAGAATGTTCTAGAGAGAAAGGAAAAGAAAAACAAGAGAGCAGAAATTCTGGAATCTCTCACTGAAGTGCAGGCTTCTGCAGAAGAGATGAGATTGTTTACAAGTATAGCTGAGATGCACTCCCAGAAATATAAACACAAACTGGAGATTGAAACAACTCCAATGGGGGAAGTGAAGGTAAATGCTATATCAGGAAGCAAGAAGAAAACAAAAGAACAAAACAAAGAAGAGACAGAGGGAAACAAATCAGACGGCAATGAATCAGAAAGTTCCATCAACACATCTGACATGTCAACTGATGAAGAAACTGAAGAACAGACTACAGACAGTGTTCAGAATATGTCACAGCTAAGTAACAGCACTGATGAAAAAGTGCAGACTGATTTAACTAAAACAAATGAGGAGGAAAAGTGTGACAGTACTGATGATAAAAATGTTCAAAACAAAGTTACAGAGAAAGCGAAAGAAACAGAGGAGAACAATGTCAGTAAAGAACCAGCATTTTTTGTTCCTGTGTCGCGATCTGCAAAAGTACAGGAGGCCAGATTGAAATTGCCAATACTGGCAGAAGAACAAGTTGTCATGGAAGCCATTAACGAAAACCCAGTTGTCATTATTTGTGGTGAGACAGGATCAGGAAAGACAACTCAGGTTCCTCAGTTTCTCTATGAAGCAGGCTATGCTCACAAAGGAGCCATTATTGGAATTACTGAACCAAGAAGAGTGGCAGCAATCAGCATGTCAAAAAGAGTTGCCATGGAGATGAATTTATCAACAAAAGTAGTTTCATACCAGATCAGATATGAAGGAAACACAACTGATGACACAAAAATTAGGTTTCAAACTGATGGTGTTCTGCTCAAAGAAGTTCAGAAGGACTTTCTGTTGACAAAGTACAGTGTGATAATCATAGACGAGGCTCATGAACGCAGCGTCTACACAGACATTCTCATTGGTTTACTCTCACGAATTGTTCCTCTCAGACACAAGAGAGGAAACCCACTAAAACTGATTATAATGTCTGCTACTTTGAGGGTTGAGGATTTTACAGAAAATAAACGACTTTTTAAAATCACACCACCTGTAATCAAGATTGATTCTCGTCAGTTTCCAGTGACAATTCACTTCAACAAAAAAACTCCAGTAGATGATTATCTGTCTGACACTTACAAAAAGATTTGTAAGATTCACAGACAACTGCCAGAAGGAGGGATTCTTGTGTTTGTCACAGGACAACAGGAAGTACACACCTTAATCAGAAAACTGAAACGAACATTTCCATACAAACCAGGCACAGTTTCTGAAAGTAAACCCAAAACTGAATCGAGAAGAAAGAAGAAGAAAAAAACTGAAACAACAGAACTTCCTAAAGTTAATCTCAATAATTATTCTGCACAACCTCTTGATGAAGAAGCAGATTTGGATTTAGATGATAATTCTGATGATGATAATCCATTTAAATTTCAATTCAGATGATGAACAGGCTGAGAATGATGAAAACAGTACATGTGACTCAGAAAACCCACTTTACGTTCTTCCACTGTATTCACTTCTCTCTAGTGAAAAACAAACAAAGGTGTTTGATCCTCCCCCAGCAAACTGTAGACTTTGTGTTATTTCTACAAACGTTGCTGAGACATCACTGACAATACCAAACATAAAATATGTTGTAGATACTGGCAAGGTGAAAACTAAGTTCTATGACAAAGTGACGGGCGTGTCAACATTTAAAATAACTTGGACCTCACAGGCATCAGCCAATCAGAGAGCTGGGCGGGCTGGGCGAGTGGCACCTGGACATTGTTACAGGTTATATTCTTCAGCTGTTTTCAATGATGACTTTGAAAAGTTTTCACCTCCAGAAATTACTAGACGACCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf173_27.13 global RNA-seq network