Gene detail

Detailed information of CsqKR_Scaf172_17.18 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf172_17.18	COLLAGEN ALPHA	chr8	22491857	22525428	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf172_17.18

Transcript

CsqKR_Scaf172_17.18

GGATCGGTGGACCTGTTACAAGCAGTGAAAATAATTGATCAGACACTTGTTGAAGACTATGATGACATTGGAGTGTTCAATGTCACTGGTATCTGTGACAGGAGGCCAATCCGTTCAGGAAATAAAACTAAATATCTCGATGACTTGGCTTGGCAGATTACTGCCGATGCTGATTTGAATACCAAATTAGAAGATATATTTCCAGGTGGATTTCCTGATGATTTTTCAATAATACTGACATTTCGCCCTGACGAGGGCACTGAGGGCAATGTATTTACTATCATCAAAGAATCAACAGGGACAGAGCTGATGGCTCTGAAAGTATCTGAAAAGACAGTATTTTTGTACAATGATTTAAAAAACAAACCAGGACCGAAAAAATCTCCAGTTTTAAAAGTACAACTTAATGATGGATACTGGCATCGAGTAGCTATTAGTGTAAAGGGAGATTCATTAACACTGATAAATGATTGCAGACAGGAAGGGACGTACAAACTAGCCAGAGCAATACCTCCGAAATTTAGTAACAATGGCATGATCTTTCTTGGAAATCAACCCTTTGATGAATCATACTTTACTGGTGACATTCAAGATTTCTTAATAATTCCTGACCCAAATGCAGCCTATGAGCACTGTGAATATTACAGTCCACCATGTACTGAGCCATTCATTGGTGGGGACTGGTACGGCAGAGTCACTAAAAAATCTAAAGGTGGAAAGAAAAGTTCTAGTTCATCATCATCATCATCAGCATCATCATTTAGCACTGATCATTCTAGTTCATATGATGGTTTTGGCAGAGCAGATTTCACTGAAGATGTGGCTTACAAATTTGGTCCTCCTGGTCCACCAGGACAGAGAGGTCCCCCAGGACCACCAGGTGTTCAAGGAGAACCTGGAGAACCAGGAAGAGATGGACTTGATGGTATGTCTGGAGCACCAGGACCTGCTGGACACATCTTCCTCATACCTCTGAACCAGGCTGGAACAAAAGCTGGTGAAAATCAAGCTCAGCAGTTTAGAACAATGTTGGCACAGCACATGCTTGCAATGAGAGGAGCCCAAGGGCCACAGGGAATGACTGGTTTAACAGGACGCACTGGTCCTATGGGTCCTGATGGAGAGAAGGGAGACATTGGAAACCCGGGTGAACAGGGACCAACTGGTCCTATGGGAATGCCAGGACCTCCAGGACCTATTGGTAAAAGGGGTAAACCAGGTCATGATGGACAACGTGGAATGATGGGTCCACCAGGAGAAAAAGGTATCCCAGGGTTCCCTGGACTTCAAGGACTTCCTGGACCAAAGGGCCACAGGGGATTAACTGGAAGCCCAGGTCAGATAGGACCGATGGGGCCTGAAGGTGACCAGGGAGATCCAGGAGAACCAGGTCCACCAGGACCCCAAGGTGAACCGGGAATTCGTGGATTTATGGGACCAAGAGGAAGAGCAGGATCTGTTGGCCCACCTGGTTTGCCAGGAAATGAAGGTTCTGATGGTCCAAAAGGAAATCCAGGACCATCAGGACCACCTGGTCCTCCAGGAAATCCTGGTGCCCCAGGACCACCTGGGCCTCCTGGACCAGTTGGTAATATTGGACCAGCAGGAATACCAGGATCTGTTGGAAAACCTGGATTACCAGGTGCACCTGGTTCTTTAGGAGCACCTGGACTGCCTGGAGCTGATGGAGCACCTGGTCAGAAAGGAGACACAGGTCCTATGGGTCTTCAAGGTGTAATTGGATACCCAGGTACTCGTGGTATTAAAGGTGACAGTGGACCAAGAGGACCGTTTGGTGAAAAAGGAGACAAGGGAGCACCAGGTGCTGATGGTGCTCCAGGAGCCTATGGAGCCAAAGGAGACAAAGGTTTAAAAGGAGTACAAGGTCCCATGGGTCCTGAGGGTATTGAAGGAGCTAAAGGAGACTATGGTCCTCCTGGTGAAAGTGGAATACCTGGACCACCTGGAGAAAAGGGCAGGATTGGCATTCCTGGTTTCCCAGGATATCCAGGTCCTATAGGAGAGAAGGGTAGCAGAGGTCGCAACGGCAGACGAGGAAGAAGAGGTGGTCGAGGAAAACCTGGTTTGCCAGGTCAAATTGGAGAGAGGGGAGAACCAGGAATGAGGGGACAAAGAGGAGAGAGAGGTAAACAGGGTATCCCTGGTCCATTTGGACCTAAAGGTGAACCAGGTCAAAGTGGACCACCAGGATTCCAAGGTGAACCAGGTATTCAGGGTCTGCAAGGACCACCAGGAGTTGCAGGACCCCCAGGAGGACCAGGTTTGCCAGGCAAAGACGGATTTCCAGGTTTGAATGGTGATCGTGGTGAACCAGGTCTCCCAGGACCTCCAGGTCCATCTGGCCCAATTGGTGTTATGGGACCTGCTGGAATAAATGGAGAACCAGGACAACCAGGAGATAGAGGTGTACCAGGAAATCCTGGACCACCTGGTGATACTGGACTACCAGGACCAATGGGAAAAACTGGACCTCCAGGTCCAGCTGGTACATCAGGAATCCCAGGGCCACCTGGTCCTCCAGGACATGAAGGATTTCCAGGAGAAAGAGGATTCCCAGGACCAAGAGGTACGCCAGGCTCTCCAGGGACACCAGGTGGCAAAGGAGAAGTTGGACCACCAGGAGAAAAAGGTGCCCAAGGTGAACAAGGAAATGCTGGCCCACCAGGAACACAGGGTATTCCTGGTCTTCCTGGCTCAAGGGGAAAGAGAGGAGAAAAAAGGAGACATGGGAATAGAAGGAGTCCCAGGTACCCCAGGACAACCAGGACCAAGGGGAGGACCAGGATACAGGGGACCTGCTGGACCAGTGGGACCACCAGGATTTGAAGGAGATAAGGGTGATCCTGGTCCTCCAGGTCTCAGAGGTTTCAAAGGAGATCATGGAGTCATGGGTCCACCAGGACCTCAAGGACCTGTAGGTATCCAAGGACCTTCTGGACCAATTGGACCTCCTGGTGAGATGGGATTAAGAGGACCACGTGGTATTCCTGGTTCAAAGGGATCAGAAGGACCTAGAGGACAACTCGGTCCCACAGGACTTCCAGGAATGCAGGGAATGCCAGGTCCCCCAGGCACTAAAGGAGAAAAGGGTGACAATGGTGTTAAGGGACCACCAGGTCCACCTGGACCAATGGGAAATCCTGGACCCTCTGGAGCAGCTGGAAACAGTGGACTTCCTGGTGTTCCTGGACCTGAAGGACCAATTGGTCCTAAAGGAGACAAGGGAGATCCTGGACCTCCTGGACCACCAGGTACTGATGGTGGACCGGGTCTGCCAGGAGTGGATGGTGCAAAAGGAGATGAAGGTCGACAAGGACTCCAGGGTGAACCAGGTCCCAGGGGACCTAGAGGACCAGAGGGAGAGAAAGGAGACATGGGTATGCCAGGACTGACTGGTCCTCAAGGAGATCCAGGGGAGCCTGGTCCTAAGGGAGAGCCTGGTGTGCCTGGAACAGATGGAGAGCCTGGTGGACCTGGTGCCTTGGGAGAACCAGGACAGCAAGGTGAACCAGGTTTACCAGGCAGGACTGGAAGACAGGGAGAAATGGGAATACCAGGAATCCAAGGACCAGAAGGACCACCAGGAGAGAAAGGAGATCGAGGTCAACAAGGACCACGAGGACCAAGAGGACTTCCTGGTCCAGTTGGCCCCATTGGACCACCAGGACCTCCAGGTCCTGCAGGACAACCAGGACCAGTGGGAGAGCCAGGACCTCCAGGTGGCCCAGGGTTAAGTGGTGATCAGGGCCAGATTGGACCAGCAGGTCCTTCAGGACCAAAAGGAGAAAAAGGACCCAAAGGAATTAAGGGCCATCGTGGATCCATGGGATTAATGGGACTCAATGGTGATCCAGGAGAAAAAGGAGAACGTGGTCCTCCAGGACCTGAAGGACCCAAAGGAGACAAGGGTGATGTTGGAAAGCCTGGACCCAGGGGTCCTCCTGGTATTGAAGGAGCTCCAGGTGCACCAGGAGCTATTGGTCCAGCTGGTCCTAAAGGAGAACCTGGTGAAACAGGTCCAAAAGGAGATGCAGGTTTACAGGGTCCCCCAGGAGAACCGGGTCCACCAGGTGACGCATCAGCTGCTGCTGTCCCTGCTGATCTCAATGTCAAGGCTGGAACAAAGAGGAAGAGGAGGCGAAGGCGAAGAAAGCGATCCATCGATGACTATGATGTGCACGATGACATCCAGAGCCAGTTGACCAACATGATGGCAAGAAGCAGGCCGAATGGAGGCGAGATTAAGATGAAGAACGTGATGAAGGAAGTGGTAACCATTCTTTTCAAGCACATCGACGGGCTGCAGGATGAGGTGAACAACATCAAGTATCCGAGAGGCACCAGAGAAAACCCAGCCACGTCCTGCAGAGACATTGCATTCGGTCATTCTGATTTCAAAGACGGATGGTACTGGATTGACCCTAACATGGGGTCCATTGATGATGCACTGCAAGGTCTGGTGTAACCTCACTGCAATGGGTGAAACTTGCATCTTTCCAACATCTCGCACAAAAATGAGTCCTGAACAGTACTGGCAGCGTAACAAAGACAATCCTCACCAATGGTTCCATAATCTGAAAAATGGATTTAAGGTCCAATATGGCGGTCCCCAGACTACTGTTCAGATAAGTTTGCTTCGAATGCTGAGTACTGAGGTCAGTCAAAGGTTCACCTACTACTGCTCAGGTTCTGTGGCCTGGTACGATCAGGCTGCCAAGGATCACAAGAATGGAATCACGTTGCTAGGAGACGATGGTACTAAGTTCAATACAGAGAACTTTGACAGGTCACAAGTTCTACATGATGGATGCAGGGATCGCAGACAAAATGGATTTACTGTGTTTGAAGTAAGATCAGACAAACTGAGTCGCTTGCCAATTGTTAGTTTTATGCCTGGTGACTATGGCAACCCATGGCAGAAATTTGGCTTTGAGGCAGGCCCAGTGTGTTTTCATTAATTCCTTTTTTTTTTAAAACATAACAAAAAATATAAAACAAAAAAAAAAGACATTTAATTAATTTGGACCGTTAATTCTGTCAAGAGATTGTGATACATGTTTTGATCATTCTCACAAAAATCCGTCCATGTTGTAATAGTCTGTCTGCAGGTATCATCAGCACTGACGTAGAAGAGCACAGATATTTGTAATAATCTAGAAATGTTTAAACTTTTCCATAGTCATAATCAATACTAATTGATTACTTTTTCTTTTTTAATTGTCATTTTTTTACAAAACAACTGGTCTAAAAACTGATTTTCTTTTTTAATTATAATTTTGGTATATAAATAATCCAAATTCCTTATTAAAATACAAAAATGCTTAATTATCATTTTCACATACGAACTCTCTAGAATTATTCCATTTATTTGTCCTTTTCAAATATGGCCAGAAGCATTCTATAAATATGTTATTCAAAATTTCAATTAAGAAAACTGTTTTTCTTTTTATTAATATAAATGAAGAAAATTATTATTTTACTTCTTTAAAATGGTATTTTTTTCTGTTACTTAACTAATCTGAAGCTCTGCCATGCATGCTGTTTATTAAAAAAAAATAAAAAATAAAATGTACTGATTTTAGAAAACATCATTATTTTATATTTTAGCAATTTAATATGTAAAGTATGAAGAAAAAAGAAAGAATTGTTAAAGCATAATCTCATGTTGACAATTGTAATCAAAATCTCATTTTGAGAACAAATAAGAATATTAACGAGTTCAATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791	Domain	Laminin G domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR048287	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf172_17.18 global RNA-seq network