Gene detail

Detailed information of CsqKR_Scaf157_1.22 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf157_1.22	ATPASE N2B	chr1	48873914	48885359	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf157_1.22

ATGGCCGACTCCGAAGAGACAGACATCAAGAAGCTATTGTTGAAAATTTGGAAGAATTACATGAACAACTTGAGAATTATCAACCACACAAAGCGCGTGGTTCATCTTCTTGGTTATCCAGAGAACTGGGTTGGTTCTATTCACTGCCCATTTTCCAGTTCCAGATCGGGAAAAACAATGCTGATGGACATGTTTCATCAGACATGCAGTGTTGACAAGAAACAGCGAGTTCACTTCAACAAGTTTATGTTGGATGTCCACAAACGGATTCATGCCCTGAAACAAACCATCCCCAAATTGAAAGACCAGAAGAGACCTCCCAGATATGACCCAATTCAGCCCATTGCTGATCAGATTACAGACGAGGGCTGGCTTCTCTGCTTTGACGAATTTCAGGTGACAGATATTGCTGATGCAATGATACTCAAACATCTGTTTACAGCATTGTTTCAGAACGGTGTTGTAGTTGTTGCTACATCCAACAGAGCCCCAGATGACTTGTACAAGAATGGTCTTCAGAGAGCTAATTTTGTTCCTTTTATTGGAGTCCTGAAAGACGCTGGTGTTGCACTGACTCTTCCTGCTGAGGATCACTGGTTTGATGTGAGACTGACACAGCTGTATTTTGTAACATCTAAATATGATAGTGAGAAAGAGTTAGACAGAATTTTTGAAGATTTACGAAAAATTCAGAATGCAGATGTTTGTCCCCGGACACTGACAGTGCTAGGCAGGAGTGTGCACCTGTCTAAAACTTGTGGAAGAATTCTAGATTGTTCCTTTGATGATTTATGTTCACGGCCAGTTGGAGCTGTAGATTACCTTGAGATCAGCAGCCACTTTGATGTCCTCATCCTGAGAAACATCCCTCGAATGAGTCTGAAAAACAAAATGGAGGCTCGAAGATTTGTTATACTGATAGATACTCTTTACGATAACAAGGTAAAACTTGTGTGTTCATCAGAAGCAGAACCCCAGGAGCTGTTTTCCACTGGGTCAGTCAGCGCCTACGACTTTGATTCAAACAGAGCTTTGATGGATGACCTTGACATTGAAGCTAATGCAAGTATTTTCACTGGGGAAGAAGAACTGTTTGCGTTTGAACGGACAATATCTCGCCTGACAGAAATGCAGACAGATGAATATTGGAACATGGAGAGAAAGTTGTCAACAAAACAAGATGCCATCACTCTAATGGCAGAAGGTGCAGATCTGTCGCCTTTACTGCCATCGGTTGTAAAGTTACTGGCGCACTCTGACCTCAGCATTAAGAAGGCAGCAGGAGAGATAGTAGCAGTGTACGGGCAGATGAGTCCAGACGTCGTCCTGTTGGCAGTGAACACGCTGACAAAAGACTGCGAGGACAGCAGCCCGATGACGAGGGGCCAGGCGCTGAGGGTGTTGTGCTCGTTGCAGCAGACAGCAGTTTTAGAACACACGCAGCAAGCTGTGATGAAAGCTTTCTCAGACAGAAGCGTGTTTGTGAGAAGGTGCGCCGTTCTTGCCTGCCTCAGGCTGCCCAAAGACTTCATCAGCGAATCTGGGCTTGTGGACAGACTGTACTCTCTCTTACGCGACTCCGACCCCGTTGTTGTCTGCAACTGTCTGCGCGTTCTCGACGAGGTGCTGCGCGACGAGGGTGGGGTGGTGGTGAACAGAGGCATAGCTCACTACCTCCTCAATCGCCTCGGTTCTTTTCCCAGCTCGTCTCAGGCGTGCGTCCTTCGCGTGCTCTGCAAGTACAGACCTGCGTCGGAGGATGAGGTTTTCGACATCATGAACGTTACCGACGTCTTTCTGAGGAACAACAGCATCACCGTGGTGGAGTCATGTCTGCGGCTGTTCTTACACTTGCTGGAGGATCTGCCACATCTGCAGGTCGAGGTCTGTCAGAGAACAAAGAGTGCCATTGTCGGCCATCTTGTCTCGGGAAATGTCGAACTGGTGTACTGCTTACTTGACCTCGTCAGACAGCTTCCTCCAGAAATGTGCAAAGTGTTCGTCCAGGAGTACAGGAATTTCTTCTGTCGACACAGAGATCCTGCCTACCTCGTCAGCAGCAAGATCACTTTTTTACCGCTTCTCGTGAACACATCGACGTACAGGGACATTCTCGATGAACTGCGCCAGCACGCCACTGACCGCTCTACACAGATTTCTCTAACAGCAGTGAAAGCCATAGCAACCATCTCGTCTCAGAATGAAGAAGCGTTTGAAGACTGTGTGGAAAAACTTGAAAATCTCCTTTCTTCGTCTTCCCAGCATGTCATTTCAAATGTGCTGCAGACGCTGGAGACCATGAACCTGTCTCAGTCGAAACACGTCAGTAAAATAATTTCCTCCATACTCTGTTCTCACAGCATGATCTCAGATGAGTCGGGGATGGTGGCCATGTTGAATCTGCTCGACACGTACGGCTGCGATGTCCCAGACACACCATACATCATAGAAGAACTTATTGAGAACTACTCCAGCATATCTTCGTGTGCACTCAAATGTCAGCTGCTGTGTACGACAATCAGAGTGTTCTTCTCGCGACCGGCAGAGTGCCAGGGCATGCTGGGAATGCTGCTGGAGTTGTGTGCTGGTGACAAGGACAGAGTCGTACATGACACGGCCATGTTTTATTACAAACTGCTGCAGACTGGTTTCCAGACAGCTAAACAAGTCGTCACAGGTCAAGAACCAGACACAGTGCCTTAA

Transcript

CsqKR_Scaf157_1.22

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF03969	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR005654	Family	ATPase, AFG1-like	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12169	ATPASE N2B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf157_1.22 global RNA-seq network