Gene detail

Detailed information of CsqKR_Scaf14_34.18 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf14_34.18	TRANSMEMBRANE PROTEIN 2-RELATED	chr9	27684969	27708992	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf14_34.18

ATGTGTGATGACGTGGACGGTGCCTGGGTAAGAAGTAACAGCATTCATCACTCACAGGCGAGATGCATCACCACACACGGCACCGATGGATTAGAGCTTAGTTACAATGTCTGTTACTTGCACAAAGGACACGGGTATTTCCTGGAAGACAGCGCAGAACAGCGTAACCGCTTCGACCACAACGTCGGCATCGGCACAGAAGCAGGAGCTCTGCTCCTCACCGACATGACATTCGAGATGTGCACTGAAGTCCTGAAATGGCGCTGCAACGTTGCGCACGAGCCTCTCGGCCCGTCAAAACAACGACAGCTAGAACGAGGCTTGGTAACCAAGGACAGCGCTAAATACACTAAAATAGCAGAATTTAAAAACAATGTAGCCCATTCAAATGCTGATCGTGGTCTGTTCATTGACGGCTTTTTGTTTAATGGAGGTCTCCATAGAGATATTTTTGTTCCTGAGAATGGATTTTTCATGGGTGCTTCCCATACACCAAGAGACCCGCCTAACAAAGACGGTACCGTCATTTCATCCGTCATCAAAAATTTCCTTGGCTACAAGAACATGAAACAAAATGTTTGGACAAGCGCTGGAATTATCATAATAGACCATGCTACGTTAGCTGATTCCCCTAGCGGGATTGCTATGTCACGTGCACAGGGCATCACCTATTCCATGGTAAACAATTCAATGTTCATTGGCGAAACAGACAACGTTGGAAACCCCAAAACTGGCTTCAACCGATCGTATGCAAGCCGTGACCTGTTAACTGAAGGCAACTATGTGTTTGACAGTTTGCATGGAGAGCTGCCACATTTTGGTAATCAAGATGGCAACAGGCAGATCAATTTCAGAAACAAAGACGGCAGCGTTACGTCCACCCCGAATACCCAGGTTGTTAAATCGGGTATCAGATTCATCACGAACCCTTGCTGTGTTCTCCGAAAATCGTGGAATATGGAAATCTGTCCTCTCCGATATGCAAAGGTGTTGTACAGAGCCCGGGGCGGAGCCTTCGATCACAAATATCCTGTCTACATGAGACGAGACGACAGACCCGATGACGTTCACTCCATTTTAGGGAAGATGGGACTTCCATTTCTGCTGATAAAAAGTAAATCCTACACTCTTTATTTCAATGGAACCGCACCTGAAGATTTACAAATAACAGGTCACGATTTTGAAACAGGAGACTTTGTCAGGATAGGAATCTGCTACAACAAAGATGTCACCAATCTGGAACTGACCACGAGGGATATTCTTGGAGCTGGCCCGGGGGTGGGGGTCAACTCAATAGAAGAGCTGGATGCGTCTGAAAACGCCCAGCATTTCTTCTGGGACAAAGCTCGAGGACTTTTCTTCTTTAAAGTCACATCGTACGCAACACGTGTTGACGGTGAGAAGTGTCCAGGGGGGGCCTGTCCACGCTGGACGATAAAGCGAACCGGGGGAAGCGACACTCAGCCAGACTGCTACGACGACGCCTACAACGGCGTCTACAACAAAGCGGAAGATGTATGTAAAGGGCCTGTCACTGATGACTGTGAACCTACCACGGCTCCCGTTTGTCAAAAATCAACATCAGAGGGATTCGGTGCTCCGATTCTTCGTCCTGATAATTTTGATCTTCCCTTTGAAGTTACTTGCCCTGCCCCAGCGACCTTGGAAGAAGGCCGGACAAAACCTGAGCTTAAAGGTTGTTACAGAGACAGCTACAGTTACAGAGACATCGGCTCAGAACTGCAGGTTCTTTTCAGATCCATGACACCAAAAATATGCATTGAAAGATGTTACCATCGCGGCTACATCTACGCCGCACTACAAAACGGGCGCGAATGTCGTTGTGGTAACGTGTACGGCGTCTACGGGGAAGATGCTGCAAAATGTACGACAAAGTGTTCAGGAGACAAAGAGGAAACCTGCGGAGGAAGACTGCGAAATCAAGTGTATTCGACAGGCAAAGAACCGTGTGGATCGAATAACTACGGCAAACGACTGGGTGCTTCTGGTTCTTGTTACGCTGTCATTAACGACAAGAACAGGTACGCTGAAGCTGCTCACCAGTGCTGGCTTCGAAATGGAGTCCCTGCCCCAGCAGACGACCCAGACACCTTGAAAGAGATTGTCAAACACGTCCAGCTCTTTGGAACATCTGGTACTAACTATTACGTGGGATCTGGAGGCCATTTTGAAGACATGTATATAGAACTTGTCTACCAACAGCTTTACAATGCCAGCGAGGTCAAGTACTGGGCACAGAATGGAATTGTCTGTTTAATTGAAACCGTGAATGCAGCAAAACCGTGTTCGTCTGACGTCAAATACGAAAAAACATCAGCGACTTTCAAAAATCTTGATGGCTCTGCTCTTGCGTACTCTAACTGGGGCAGTAACCAAGGTGACAAAAACACGAGGAGAGGGGAGTGCGTCTTGTTTTCGTCACAAGACGCGAACTACACGTGGTACAACAAATCGTGCTCGTCTTTGTACTCAGCAATGGAATGTGAAGCCTATATAAAGAAAACTGAAGAAATGGGTTATGAGCAAGCCTTGCTAAATGTTGGTTTTGGAAGAAAATGTGTTGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCGGGTGTACAGAAACTCAGGGAAGATGTCAGAAAAAGCAGTCGTTGTATATGGGACTCGGAAGAAGAGGCAGATAAACTTTGGAAGAGGATAAAACCGTTTGTTCCCAGCGTGTTCCAAGGTGATGAAGTGTGTGGACTTAATGAAAGGTTGAGGTTTCTCAGGTACGACCCTGGTGAGTACTTCACAACTCATTACGATGGAGCATACAGCCGAGACAATGGAGAAACGAGCAGAATCACATTTTTGTTGTATCTCAACGAGGGTTTTAAAGGGGGAAACACAACATTTTTCTATGGAAATGAAATATTGCCTTATATTCCCAAGACAGGCTCAGTGCTGATGTTTGAACATCACATTCTCCATGAAGGATCAGAGTTGCTGGAAGGCAGAAAGTATGCAGTTCGGACTGATGTGATGTACACTAAAGCCTTGGTAAAGCCTTGGTAA

Transcript

CsqKR_Scaf14_34.18

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01822	WSC	WSC domain	Domain	Interproscan
PF13640	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002889	Domain	Carbohydrate-binding WSC	Interproscan
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR011050	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR044862	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR052252	Family	Hyaluronic acid metabolism regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15535	TRANSMEMBRANE PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf14_34.18 global RNA-seq network