Gene detail

Detailed information of CsqKR_Scaf129_6.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf129_6.20	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	chr6	20989959	20998673	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf129_6.20

TAAAAAATGATGATTTATCATCACTGGAACCTGTGAAAGATTGTGATGAACTTCTGTCAAATGAAGAAGATGCAGTGACATACAGTGAAAAAGAAGATGAATTTGATCCTGTGACAGCAAAGGCAACTCTTATAATTTGTCCACTTTCTGTGCTGGATATCTGGAAGATGGAGATAGAGGAACATGTTCATCCTGATGTCCATCTTAATGTTTACACATACCAAGGAACAATGCGTTCGAGTGAAATTCTTGCAAACCAAGATATAGTTTTTACAACATATGGTACAGTGACATCTGATTTCAAGAGAAGAAGTCAGAAAACTCATACAATACTAGACGTCCCTTGGCTGCGTGTGATCCTTGATGAAGGTCACTTGATTAGAAATTCCTCCACTAACAGGGCAAAGGCAGTTAAAGAGCTGAAAGCAGAGAGAAAATGGATTCTGACAGGCACACCCATTCAGAACTCCATTCATGACTTGGGATCTCTTCTGAGTTTTCTAAACATTCCACTGTTGATAGATTCTGTGTTGTGGAGAGATGCTATAGCGATACCAATTGAAAGGGGAGACACATCTGCACTTAAACATGTACAACACTTACTGGCCAACATAGCAATGAGAAGAACAAAAAACCAGAAGGTGGATGGCAAACCACTGGTTCAGCTTCCTAACAAGACAGAAATCACAGAAAGAATAAAGTTCTCAGAAGAGGAGAGAAATATCTACAATCGCATGTATACAGAAGGAAGAAAGATGATCAGACAGCATTTTGAAAACAACACTGTGCTCTCTAACTTTACTGACATTTTTTATGTCCTACTACGCCTTCGTCAGATCTGTTGTCACATTTGGCTGAATGCTGAACTGAAACATTTAACACAAGATGGATCAAATGACAGTGAAGATGAAAAAACAAGAAGAAAAGCAATAGCTATCCTGAAATCGGGATATGATGAAGAATGTTCAGTTTGTTTGGATAGAATTTAACTCCCCTGTTGTCACACGTTGTGCCCATATCTTCTGTTGCAAATGTATTCAAGATGTCATTGACACAGAAAAGCCCAATGCAACATGTCCACTGTGTAGAAAAGTTTTAAGCCAGAAAGATTTGATTGAGGTCAACCTGGATGATGATGAAACACCCTTTGTCATTCCAGATAATTGGAAATCAAGTTCCAAGATTGATGCTCTGATGAAATCACTGATCAAACTGCGAGAGGAAGATGCCAAAATAAAAAACATATTTTTCCATTTTTGGGACAAAACTCTCAATGTGATGCTTCCACATCTTTCTGTCTTACACTATCCTCTGCCAGGTGTTTACTTTCCAGTACACAACCAACAAAATGGTTTTAAGTTTGGACGTCATGATGGTAAAATGAAACCAGCAGCTCGAACAAAAGCCATCCAGACTTTCATGGATGAATCTCCTGATTCACCAACCATTTTCCTTTTGTCCTTGACAGCTGGAGGACTTGGCCTCAATCTGATAGCAGCTTCCAGAATGTTTGTAATGGATCCAGCTTGGAATCCTGCTGCTGAAAATCAGTGCTATGACAGAATATACAGAATTGGGCAGAAAAATGACGTCATCATTACAAAGTTTATAGTTGAGGACTCTATTGAGGAGAGGATGTGTGCTCTTCAGGAAAAGAAACGTGAGCTGATGAAGGGAGTTTTCAAAATCCAGACAAATAAAGAAAGAAGATCTGATATGATTGCATTCATCAGATCTCTTCTTAACTTGTAGCTCACAGACTCAGAGACATTGTTATTTTGTAAATCAGTGAATCAGAGACATTGTTATTTTGTAAATCACAGAATCAGAGACATCTTTATTAAATGCTAAAGCCTTTCTTGTAAGTAAGCGAATCAGACAGACTGTTATTTTGTAAATCATAGAATCAGAAATATGTTACTGCAGGTGATTTAGAAAAAATGAAAATGAACTGTGAAGGATAGATGTGCAAAAAGTGAATATAGGCAACTATAAAATAAACAAAAAAAAAAAAAACATTTATTGTCATCTTTCA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050628	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf129_6.20 global RNA-seq network