Gene detail

Detailed information of CsqKR_Scaf117_1.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf117_1.10	-	chr1	5030903	5045362	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf117_1.10

ATGGATTGGTTCAGTATGTACTCAACAATACTGGTGTTAGTGGTCAGTATTTGTTACTACAACTCATTGGAGTGTGGTTTTGTGTTTGATGATGTGTCTGCAGTTATTGACAACAAAGATTTGAGACCTATCCAACCAGTTTCAAAACTGTTTTGGAATGATTTCTGGGGAACACCTATGGAAAAGGAGAGAAGCCACAAATCTTATCGACCTCTTTGCGTCCTGACATTTCGATTAAACTTCGCTATCAGTGAACTGGAGCCAATGTCATATCACCTGGTCAACATGTTACTACATTCTGTGGTCTGTGTTATGTTCATGAAGATGTGTTGTATGTTTATGTCTGACACAACAAGTTTTCTGGCAGCCTTTTTGTTCTCAGTGCATCCTGTCCATACTGAAGCAGTTACTGGAGTGGTAGGAAGAGCAGAAATGTTGTCTTCCATCTTCTTTCTTGCAGCATTTATGACATACTCAAAGTCAACAGGATTTAGAGCAAAAATTGACTGGATCAGCCTTTGTGTAACCGTTGGCTTGGTAACTGCTGCTATGCTGTGCAAGGAGCAGGGAATCACTGTGATAGGAGTGTGTTGTGTGTATGAAGTTTTTATTGCTCAGCGGGCAACATTTAAAGAGATAATGGATTTTCTAAAAGGAATTCTAAGAGGAAAGCCTCACACTCTGCCATGGTTAAGAACGTCTGTGGTCCGAGCTGGTTTTCTTGTCGGCAGTACACTGTTTCTCCTCTTTGCTAGAATTAAAGTTATGGGTGCCCAGCTTCCTCACTTTACCACATTTGATAATCCAGCTGCAAGTTCTGATTTTCCAGCAAGACATTTGACCTATAATTACTTGCTGTCGGTCAATGCCTGGCTTCTCCTTAATCCTTCAGGGCTTTGCTGTGATTGGACAATGGGTACCATCCCAGTAATTTCATCTGTTCTGGATTACAGGAATATCTTCACTATTTTGTTTTATGCTGTTTTCTTTAAACTGGTTGTTTTTGCTTTAAGTGGCCAGAATATGAGAACGAGAGTGGTAATAATTTCACTGTCATATATAGTTCTACCATTCATCCCAGCTTCAAATTTATTTTTCCCTGTGGGATTTGTAGTTGCTGAGAGAATCCTTTACACACCTAGCATGGGATTCTGTATGTTCATTGCTCTAGGTTTCGAACTTCTCTTGCAGTATAAAAAGGATATGAAGATTATTCTGTATGTACTGATGGGTCTTCTGCTGCTGACTCATGCAACAAAAACAGTTGTTAGAAATGAAGACTGGAAGTCTGAATATACCCTTTTCCAATCAGCACTGAAAGTAAACCAGAGAAATGCCAAGCTTTTCAACAATGTGGGTCATGCACTGGAAAAAGAAAATCGCTACAAGGAAGCACTGGAATATTTTAAAAAGGCTGCCAGTGTCCAGCCAGATGATATTGGTGCCCACCAGAATGTGGGTAGAACTTACAGCACACTAAACATGACAGATGAAGCAGTGAAAGCCTATAAAAAAGCTCTTGATTTATTCCCACCGGTGATTCCAGGTAAAAGTTACAAAACTCGCATAGCTCCGAACCACCTTAATGTCTACTTGAATCTGGCCAGTTTGATAGGAAAAGATCCAAACAGACTAGAAGAGGCTGACCGTCTTTTGCAGACGGCCATTAGCATGAGATCGGATTATATTCAAGGCTATATCAATAAAGGAGATATCCTCGTTAAACTTCGAAGAATGGAAGAAGCAAAACATGTGTACCAAAAGGGACTACAGATAGAACCAGACAATGCAGATATTCATTACAATCTTGGGGTTGTTTGCTTGGAGATGAATAATCCCTCTGAGGCCAGCATTCACTTTGAAAATGCCTTGAAGTATAATCCTGATCATTTTCTATCATTATTCAATTCAGCCATTTTGCTTGAAAAAACTGAAGATCCAGAGATGAGAGCAGAGGCTGTGAGAAGATTAAAACGCTGCCTGAAGACTGAGAAAAATAATTCTCAAGTTTATTTCCATATTGCTGTGATTAGTATGGATGAGAATAACTTTATTGAAGCTGAAGAAAACTTCAAGAAAGCTATAGAGCTGGAACCAACATTTCGCAGTGCTCTCTTTAATTTGGCTTTGATGCTGGTTAATAACTTGAACAAGCCACTGGAAGCCATTCCATATTTAAATACAGCTCTCAAGCATCACCCAGATCATATTAAAAGTTTGTTTCTGATGGGTGATATCAATGTTAACTATCTCAAAGATCTTGATGCAGCTGAAAAGAATTTCAGAACAATTCTAGAGATGGAACCAAAACATGTGCAGGCAAATCACAATTTGTGTGTGGTATTTGTTGAGAAAGGTGACTTGCTCCGAGCTGAGAAGTGTCTCATTGAAGTAATTAAGCTCGCTCCCAATGAAGACTACATAAAACAACATCTGAACATAGTTAGAAACAAAATACAGCAAGTCAGACAACAAATGCAGGCAGGAAATGTGAAGGCAACAAACAAGCAGCAAGAGGGTGGCAACTCAAAACAACCAGCAGACAAGAGAAAGACACCAGGAACATAG

Transcript

CsqKR_Scaf117_1.10

TAATAACAAAAATCATGGCAGCGCCCTATTAATGTGTTGAAACACGAAATCTGTTACAATTTTAAATATTTGTATATATTGGTGGGTGATGACTGAAAATTTTGACCATGGATTGGTTCAGTATGTACTCAACAATACTGGTGTTAGTGGTCAGTATTTGTTACTACAACTCATTGGAGTGTGGTTTTGTGTTTGATGATGTGTCTGCAGTTATTGACAACAAAGATTTGAGACCTATCCAACCAGTTTCAAAACTGTTTTGGAATGATTTCTGGGGAACACCTATGGAAAAGGAGAGAAGCCACAAATCTTATCGACCTCTTTGCGTCCTGACATTTCGATTAAACTTCGCTATCAGTGAACTGGAGCCAATGTCATATCACCTGGTCAACATGTTACTACATTCTGTGGTCTGTGTTATGTTCATGAAGATGTGTTGTATGTTTATGTCTGACACAACAAGTTTTCTGGCAGCCTTTTTGTTCTCAGTGCATCCTGTCCATACTGAAGCAGTTACTGGAGTGGTAGGAAGAGCAGAAATGTTGTCTTCCATCTTCTTTCTTGCAGCATTTATGACATACTCAAAGTCAACAGGATTTAGAGCAAAAATTGACTGGATCAGCCTTTGTGTAACCGTTGGCTTGGTAACTGCTGCTATGCTGTGCAAGGAGCAGGGAATCACTGTGATAGGAGTGTGTTGTGTGTATGAAGTTTTTATTGCTCAGCGGGCAACATTTAAAGAGATAATGGATTTTCTAAAAGGAATTCTAAGAGGAAAGCCTCACACTCTGCCATGGTTAAGAACGTCTGTGGTCCGAGCTGGTTTTCTTGTCGGCAGTACACTGTTTCTCCTCTTTGCTAGAATTAAAGTTATGGGTGCCCAGCTTCCTCACTTTACCACATTTGATAATCCAGCTGCAAGTTCTGATTTTCCAGCAAGACATTTGACCTATAATTACTTGCTGTCGGTCAATGCCTGGCTTCTCCTTAATCCTTCAGGGCTTTGCTGTGATTGGACAATGGGTACCATCCCAGTAATTTCATCTGTTCTGGATTACAGGAATATCTTCACTATTTTGTTTTATGCTGTTTTCTTTAAACTGGTTGTTTTTGCTTTAAGTGGCCAGAATATGAGAACGAGAGTGGTAATAATTTCACTGTCATATATAGTTCTACCATTCATCCCAGCTTCAAATTTATTTTTCCCTGTGGGATTTGTAGTTGCTGAGAGAATCCTTTACACACCTAGCATGGGATTCTGTATGTTCATTGCTCTAGGTTTCGAACTTCTCTTGCAGTATAAAAAGGATATGAAGATTATTCTGTATGTACTGATGGGTCTTCTGCTGCTGACTCATGCAACAAAAACAGTTGTTAGAAATGAAGACTGGAAGTCTGAATATACCCTTTTCCAATCAGCACTGAAAGTAAACCAGAGAAATGCCAAGCTTTTCAACAATGTGGGTCATGCACTGGAAAAAGAAAATCGCTACAAGGAAGCACTGGAATATTTTAAAAAGGCTGCCAGTGTCCAGCCAGATGATATTGGTGCCCACCAGAATGTGGGTAGAACTTACAGCACACTAAACATGACAGATGAAGCAGTGAAAGCCTATAAAAAAGCTCTTGATTTATTCCCACCGGTGATTCCAGGTAAAAGTTACAAAACTCGCATAGCTCCGAACCACCTTAATGTCTACTTGAATCTGGCCAGTTTGATAGGAAAAGATCCAAACAGACTAGAAGAGGCTGACCGTCTTTTGCAGACGGCCATTAGCATGAGATCGGATTATATTCAAGGCTATATCAATAAAGGAGATATCCTCGTTAAACTTCGAAGAATGGAAGAAGCAAAACATGTGTACCAAAAGGGACTACAGATAGAACCAGACAATGCAGATATTCATTACAATCTTGGGGTTGTTTGCTTGGAGATGAATAATCCCTCTGAGGCCAGCATTCACTTTGAAAATGCCTTGAAGTATAATCCTGATCATTTTCTATCATTATTCAATTCAGCCATTTTGCTTGAAAAAACTGAAGATCCAGAGATGAGAGCAGAGGCTGTGAGAAGATTAAAACGCTGCCTGAAGACTGAGAAAAATAATTCTCAAGTTTATTTCCATATTGCTGTGATTAGTATGGATGAGAATAACTTTATTGAAGCTGAAGAAAACTTCAAGAAAGCTATAGAGCTGGAACCAACATTTCGCAGTGCTCTCTTTAATTTGGCTTTGATGCTGGTTAATAACTTGAACAAGCCACTGGAAGCCATTCCATATTTAAATACAGCTCTCAAGCATCACCCAGATCATATTAAAAGTTTGTTTCTGATGGGTGATATCAATGTTAACTATCTCAAAGATCTTGATGCAGCTGAAAAGAATTTCAGAACAATTCTAGAGATGGAACCAAAACATGTGCAGGCAAATCACAATTTGTGTGTGGTATTTGTTGAGAAAGGTGACTTGCTCCGAGCTGAGAAGTGTCTCATTGAAGTAATTAAGCTCGCTCCCAATGAAGACTACATAAAACAACATCTGAACATAGTTAGAAACAAAATACAGCAAGTCAGACAACAAATGCAGGCAGGAAATGTGAAGGCAACAAACAAGCAGCAAGAGGGTGGCAACTCAAAACAACCAGCAGACAAGAGAAAGACACCAGGAACATAGCAGCAAGATTTTTTTTTTTTCCTCAAATTCATTTACTTTACATGAGTACCGAGTTTTTCGAAAAAGTATTTTAAATGTATTTTAGAGATTTTTGTATTTTTGGGGTGTTTTTTTTTCTTCCCCATTTTGATATACAGGTTCCAGCAAGCTTACAGAAAGCTATATTAGCTTTCAAATATATAGATATATATATATAAAATATAGTTTATATATATTTTAGGTTTGTTACTAGCATCAAGTATCAAACATCCAATATATAATGCTTCTTGACTAGTGTTGATATTAGTGTGTTTTGAAATGTGGCTGAAATGTTACTTGCATCACAAAATGTGGTGTTTAAAGTTTTTTTGGAGAGATCATCTCCTGTGCTTATGCAGTTTGATTACAAAAAATGAACTATCTGAAACTTAGTAAATACAGGTACACAGCTGAAAGACTGGTCTTTTGAAATTTGTTAATTTACATTTATTATTTTTTAAATTAATAATATAATTTTATAGATGGAGCTTTTACTCATAAACCTGTACCATTTGTACTAGTTGTATTACATTTAATATGGCCTTAGGAGCATAGGAGATATATATTTACTCATTAGTTACTCAAAGGTGTAGTGTTAAATTATGATTATTAAGTCCTGAAAAACTGATAATCTGGAAAGGCTTTGGAACCAGAGGTTCTTGCAAATAATGGTTGCCTTTAATTAAATTTTATTATTAATTAGATCATTCTATAATAGGTGCAGCAGATTCTAGTATATATATATATATATTTTTTTTTTTCTTAAAACAGTTAACAAAACAAATTTTAATATATTATTAATCTTTTCATGGTGCAGAAATTGTTATTTTCTTAAAAACTTTTTTTTATCAAAATTGTAAACCAAATTTGCCAGCAGTTTGATATTTTTTTTTATGAAGCTGTAATTATAACTTCAGTGAATGTTAATAATAGTTTGATGATAATTTATTTCATTACATTGATGATATCCACTTTTGTGTTTGAACGTATGTATGTACTATATATATATATGTATATTTGCACACATGTTCAAAAATAAATGTATATAATAAAAATTACTAAATTGCATGAAAGTAAGTGTGTGTGGATGAAAATGTGCAACACCAGATGTAAAAAAAAACCCCAAAGCTGGTCTTTTTTCATTATTAATTTTGTTTATACTGCTGACAAATGTTGTCTTAGCAGAAGTAATATTCCTACTGATTTGTTGATGTAAATTTTATTACTTATTTATTTTTAATCCTTTTTTTTTTTTTTTTTTTTTAGATATTTAGATATTGAGAGTTCCTTTTAAGGACAGTTCATGACAGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08409	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13414	TPR_11	TPR repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44395	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000030	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf117_1.10 global RNA-seq network