Gene detail

Detailed information of CsqKR_Scaf116_7.41 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf116_7.41	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	chr10	14699479	14706753	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf116_7.41

ATATTAGTTTTCTATTATGGTATCTGGGGCTGACCGTGGATAATGTGAGTGACATTAATAGGCTTGTTTTATACAAACTTGATTTCTGATGTTCATCCCTGCCCTACAAAGAAAAGGGCTACATTTAGCCTTTCATTCCAAATGTTTAAAAGGGTATTATATGACGGAAGAGTAGGTCACTTGCAGCCAGTCAGTTGTCAACACAAGGGACGTTGTTGGCCTGTGTTGTGTGTAGCACAGATTCGTGGATGTGTTTGTGGTGCTAAGTAAAGCTATGAACATGGGTCAGAAGGTTTCCGGTGGCATCAAAACAATTTCTAATTCCAGAGAGCCGACGTACAAGGCAATAAACCGTGAGCCAGCATACAACCCCGATTTTCAAAAACCCAGTCGACTGGATGCGCTTCTCGACATGCCTCCCGCGACGCGCGAGGTTCAGCTGTCTCACGCCTGGAACGCAGACGACCGCTCGCTCAACGTGTTTGTTAAGGAAGACGACATGATGACGTTTCATCGCCACCCTGTGGCACAAAGCACAGACTGCATTCGTGGCCGGGTTGGCTACACTCGGGGACTTCATGTGTGGGAAGTGATGTGGAGTACACAACAACGGGGAACGCACGCCGTTGTTGGCGTGGCCACTGCTGACGCTCCTCTACACTGTGTAGGCTACCAGTCTCTAGTGGGTAGTAACAAAGAATCATGGGGGTGGGACCTGGGGCGAAACAAGCTGTATCATGATATGAAAAACAACCCTGGGCTCACCTACCCCACACTGCTAAATTCTGACGAGAACTTTGTTGTTCCTGACACGTTCCTTGTTGTCATGGATATGGACGAAGGGACTCTAAGCTTCGTGGTGGGAGGACAGTATTTAGGTGTGGCTTTCAGAGGTTTAAAAGGAAAAAAACTTTATCCAATAGTCAGTGCAGTTTGGGGTCATTGTGAAATCACCATGCGCTACATTGGTGGGCTGGATCCTGAACCCCTGCCCCTGATGGATATTTGCAGAAGATCTGTGAGACAACAGTTAGGAAAGAACAAGCTGCATGAAATTCATCGCCTTCCCCTTCCAAATTCACTAAAGTGTTACCTCCTATATCAGTCCTAGCCTTCAGTCTCCCTAGTACAACTTTTTCAGTGGGCAGTTCATTTACTTTATCTCTAATGTCACTAAGTACAAATCTATTCTCAATGAATACAGTTTTTTTTTTTTCATATTAATTTACATTCTTCTTTAGGAAAAGATTTTTTAAACATTTGGAATTTTAATATTAATATTTGAGATCACAGTAACATTATAATTACGGAAAAAAAAATGTATATGTTAATCATGGTTGTGAGTTACTAAGCATTTTTTATATGGCTTGTGAATACAGCAAATATTTACACCAACGAACAGCGCACTGTCAGTTTTTTAACATGGTGTATTAGTTAAAACCAGCTTTGTGATCAGTGAAAACAAATTTCAAAACTGCTGACTTCATTTTTACAATCAGTCTTGTTTTATGTCTAGAAATTTGTAATGTGCAATTCAGATAATCCCAATCATATTCATTTAAATTCTTAAAATTTCACTGACAAGTTTATTGTATTAGAAATATGGATTGAGAAGAGATTTTATTTTATTTCTCTTGCTGTTATAAGATCAAAATGAACTCTGTTTAAGATGAAATAATCCATATTTGTTATATCCTTTACAAGAAATATCACAGGTTAGACCATAATTATATATGTTAAAAAAACACTGATACATTTACCTTTTAATTAAATAACAAACTATGAAATATCTGTTAAAACTGTAAAACAAAGTTTTATGAAAGAAGAATCATTTTTTATAATTAACTTTTTCGTAAAGGAATTTGCTGTAAAATGGTTTAACATATCAGGTAAAAATGATTGGCCTTACTCAGCCCTGCCCATGTAATCTGAGGTGTTTTAAAACTAGTCACAGGAAGAACCAAATCTCTCACTTCTCATTGGTCAGGCCAAAAAACATTTACAAGATATACACACATACACATACCCAGGATATTTAAACAAAACAAAACAAAAATATATATATATATATTAGTAATAATTGAAATTACCACAATTCAAAACTCAAAAAAACTTGTTTTAAAAATACAATTTTTT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622	SPRY	SPRY domain	Family	Interproscan
PF07525	SOCS_box	SOCS box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496	Domain	SOCS box domain	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR050672	Family	F-box/SPRY and SOCS box protein families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf116_7.41 global RNA-seq network