Gene detail

Detailed information of CsqKR_Scaf113_9.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf113_9.20	ALPHA-MANNOSIDASE	chr15	5718469	5729918	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf113_9.20

GTATTTTTATATTTTGATTCCTTTTGGCTATGACTCTATGAGATTATTTTTTAATATCACCTGTATAATTATATATTTCAGGTAGTGATGCAGATGGATGCTTTGGCTAAACTGGAAGACACAGATAACAGCACATACAACATACAGATACTTAAGGAAGCAATGGGAGTTAACCAACATCATGATGGAATTAGTGGGACATCTAAACAAGTTGTGGCCTATGATTATGCAGAGCGTCTTGCAAAAGGAGTAATGGAGGGACAGAAAGTTGTCAATGATGCTTATAAAAAGATTCTTCCTGTCAGCAGTACAGCTGTACCAGGACAAGCTTTCTGTACTTTGCTGAACATCAGTTACTGTGAGGTCACCGAGAAAAATTCTATGTTTCAAGTGCTGGTGTACAACCCATTAGCTAGGAGTGTGAGTTATCCAGTATGGCTGCCGGTCACAGGTCAGAAGTTCACTGTTACAGGGCCTGATGGAAAGACTGTTCCTTCTGAGGTTTTTCAAATAAGTCCTGACACAATGCGAATACCTGAAAGGAAAGGTTCTGCAGCCAAATATGAAGTTTTCTTTGAAGCACAACTCCCACCTTTGGGCTTCAACACCTACTTCATAAAACTAGCTGCACAAGAAACTGATCACAAGTTAGAACGTCAGCTTATAAATGATGGACCAGATGTGCAGATTGGAAATTCATTTATATCTCTCACTTTTGATGGAAGCTCAGGCAAATTGAAACAGATGAAAAATCTCAAGAAAAACATCAACATCGACATTGACCAACAATTCCTCTACTACATCAGCCATGCTGGCAACAACAGCAAGGACATTTTCCAGGCATCAGGTGCTTACATCTTTCGTCCCAACGGAACCAAAGCACACAATCCTACAGTGAAAACTGTTAAAAGTTACATTGTTAAGGGAGAGCTGGTACAAGAAGTGTATCAGGTGTTCAGTGACTGGTTGACTCAGGTTGTCAAGGTGTATCACAATCAGCAGTTTGCAGAGTTTCAGTGGACTGTCGGACCAATACCAATCAATGACAAGTTGGGAAAAGAAGTAATCAATTTATTTGGAACAAATCTGAAAAGTGATTCTTTGTTTTATACTGACTCTAATGGCAGAGAAATCCTTCAGAGAAAACTGAATTACAGGAAAACGTGGAAACTTAAGCAGACAGAACCCATTGCTGGAAACTATTTTCCTATCAACAGTAGAATATACATTCAGGACAAATCAAAGAATGTGCAGTTTACAGTGTTGACAGACAGGTCACAGGGTGGTTCCAGTCTCAAAGATGGACATCTTGAAATCATGGTACATCGGCGACTGCTACATGATGATTCTCTTGGCGTTGATGAGGTTCTTAATGAAACAGGTTCTGATGGGAAAGGTTTGATAGTGAGAGGGTGTCATTACGTTTTTCTCGATTCAATCGATTCTTCTGCTTCTCTGCATCGTGACCTGGCTGAAAGACTTTTCATGGCACCATCCATCTCCATGACAACAGAAAAATCATCACACAGCGACTGGAGTAAGAAGTTCAAAACAAGTTGGTCAGGATTAAAAAGAGCTTTGCCTGACAATGTTCACCTTCTGACACTAGAACAGTTTGCAGGGTCAGGCCCTGTCGCCTCCAAGACACAACCCTACCTCCTTCGACTGGAACATTTCTATGAGAAGAATGAAGATGCTAAACTTTCACAACCTGTCACAGTATCATTGAAGGATTTGTTTGTGCCATTTGACATAGAGAAGGTTACAGAGCTGACTCTTGGAGCCAACATGGCACTGTCAAAATTAGACAGACTCAAGTGGAAAACAACAGACAGGCCAGCAGAGAAAGATACCACTTTGAGATTTGAACCAAGTTCAAACCCAGATCCTTTCACCATTACACTGAATCCAATGGAAATCAGAACATTTCAAGTGGAAATTAAGTAGTCATTCAGACAGAGAAGAAATATTAAAAAGACTTTTTTATAAATATTTTTTTCCTTTTTTTATTTATCTTTTTACCAAAAACTATTTTTTAAATAAATTTAGCATTAAGATTCCAGTTAACAAATAAATTTCTATTATCACAGTATGAATTTCATTTATTTGGGAAATTGTATTAATTTGTTTGATAATTCTGTTAAAATAGGATTTTATAATTGTCAGGTTTAAATTTAGTTAAATCTGTACTATATCTAAAGAACAAAAATTTGTACTAACATGACAAGTTATATCACTTTGTTTTTTATTTTTTCCTCTTGCCTTCATTTTTGTAACATTTATTTTTGGTGCACGTGGTTTATTTTTATTGAATGGGTCAGATTTGTACATTTTTTGTCACTTCAGTACTGTTGTTTTTATCTATCAATTAATCATTTATTTTTATTAGAAGTTAATTAATGAAAATACTGATACTGTGATTCACAAAATATTGATGAACCTAGTTGAGAGATTATTTATTCAATACACACATTACACTAATTTTAAGTATTTGAAATTTTGTGTATCTTTTTGTTTTTTCTAGAAAAGATTAACTTATCCTATTATCTGTTAAAAGAAACACTTCATTTAATTGAAACTGAAAAATCTCAACATTGCATTCCATTTTAATAATGATCAGATGAAATGAACTATGGAAGGGAGATAACCATTTTCAAAAGATTTTTTTCTGTTGGTGATAGATACATGATCAGACATTTATTTTAAATACTGACTTTATTTTTGTATATTTTGTATATCTCATTGTTTATAAATGCTGGTATTTAAGAATGCTAATGTTACAAGACACATAATTTTTTTTTTTTTTTTTTTTTGAAAAACAATTAAATATAACAATTCTTTGCTTGGCTATTTATATTTGTATTAACCTTTAGATATCTATTGTTTATTATTGTTACTTTGTTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATACTCATACCACCACCACCACTACTACTACTATTATTACTATTAATTCTATTACTGCAGTTATTATTATTATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07748	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan
PF09261	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF17677	Glyco_hydro38C2	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	Domain	Interproscan
PF21260	Laman-like_dom	Lysosomal alpha-mannosidase-like, central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR011682	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR013780	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR015341	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR028995	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR037094	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR041147	Domain	Glycosyl hydrolases family 38, C-terminal beta sandwich domain	Interproscan
IPR048534	Domain	Lysosomal alpha-mannosidase-like, central domain	Interproscan
IPR050843	Family	Glycosyl Hydrolase Family 38	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004559	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006013	Biological Process	mannose metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf113_9.20 global RNA-seq network