Gene detail

Detailed information of CsqKR_Scaf107_8.21 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf107_8.21	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	chr14	16200852	16226555	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf107_8.21

GCAAAATGTCACATCGCTCTAGAGGTACAGTTCATTTCAGCTGGATGCAATCACTTCAAAGTTAATTTAAAACAACACAAGAACAGAAGAAAAAAAAATATTCTAGTATGATTGCGAAGACTGCATCCAGAATTTTTGCTGGAACAGGTCTGTTTTGATGTTGAATAACAGAAACAAAACAAACTCATTGCACGTCGACTTCTAAAGTGAGCTGTAATTGTAATTGGGAATTAGAAACAAACTTCGATAGATTTTTTCTTTTTTCTTTTTCTTTGATTATACTTAATGATTGTTCCTGCTGTGGATACATGGATGTTGTACTTAAAACCTCTACTGAAATATGTCTGTCTGTCTCTAGCTCTGTCCACTGATATTTTACACACACAAGACTGTCAACTAGAGCTATGGAGCTGGCTGTTTTACACACATCACTGTTTTGGCTGCTGCTGGCAGCAGTGCTTCAGCCTGGCTCATCGGCCGCGACATCAGAGAAACACAAGTACTTCAAGCGCATGCCTCGCCAACAGAGGCATCGCAGTGAAAAGCCAAACATCGTTTTAATCCTGACAGATGACCAGGATTTGTTGTTAGGATCTTTAAAGGTAATGCCAAAGCTGCGTCGACTTCTGATTGACGAAGGTGTGACGATGAACAACTCCTTCGTCACCACACCCATGTGCTGCCCCTCCCGCAGCTCCATTCTGACAGGAATGTACCCTCACAACCACAACGTCTACACCAACAATGACAACTGTTCATCGGTGATGTGGCGCAAAGAGCACGAACCTCATGTGTTCTCCACCTACCTCAGTGACGCTGGCTACCGCACAGGGTTTTTTGGCAAATATTTGAATGAATATGATGGATCGTACATCCCACCAGGGTGGAAGGAGTGGGTGGGACTTATCAGAAACTCCCGCTTCTACAACTACACCGTCAACTTCAATGGAATGAAGGTAAAACACGGCGACAACTACTACAAAGACTACCTAACCGATCTCATCGCCAACGACAGCGTTACCTTTCTAAAACAAAGCAAACAGTATTACCCAAGCCGACCTGTGTTAATGGTATTAAGTACACCAGCACCCCATGGCCCAGAGGATGCAGCACCCCAGTATCAACACATGTTTGTCAACAATACTGACCATCACACTCCATCCTGGAATTACGCTCCAAACCCAGACAAGCAGTGGTTGCTGCAGATAACAGACCCAATGGCGCCGTTGCACAAGAAATTCACCAACCTGCTGCAGCTAATGCATGACTACAGACCCTGCAGTCTGTGGATGACCTCGTTGAAAAGGTGTACAATGAGCTGAAATTACTGGGAGAACTAGACAACACTTACATAATCTACACCTCAGATCACGGCTACCATCTTGGTCAGTATGGACTTGTAAAAGGAAAAGCGATGCCGTACGAGTTCGATGTTCACGTTCCACTCATAATCAGAGGTCCAAACATCCAGCCGAAAAGTTTATTAAACAACATCGTCATCAATGTCGACCTGGCAGCAACAATCCTCGACATTGCTGGCCTGGACATCCCAACACATGTAGATGGACGCTCGATTCTTAAACTGATCAAAGCTTCCAAAGACCCTGCCAATGTGGACAGTAATCATTTTGTGAAGACTAAAAAGGTTATGAGGGATACAGTGCTGTTGGAAAGAGGAAAAGTGACGTCGAAACAGCTGAAGGTGCAGATGCGCAAAGAAAAGAATCAGTTCTGGTTGACAGGCGGCCTCGACTGGTACATGCCGAAGATGGTGAGAAAACGGGAGGAATGCAAGAAAACAGATTTCCAGCTTCCTTGTAAACCACGCCAAAAATGGTTTTGCACTATGCAGAGTGGAGGAAGATACAAGAAACAAAAATGTAGAGGCAAATCAAACCCCAAACCTGTTGTCCAGCAGGATGAGCCCTCCCCATGTGACTGTAACAACCAATCAAAAAAAATCAACAGACAGGAGAGGAAGAAACAAAGAAAATTCATACGAGATCATGTGAAAAACGGTAAAGATATAAGCATAAAGTTTCTGCGAAACAAGAGATCGATAAGTGCATTAGGGTATGATAACACTGATGCTATTCATTTAAAAATGTCCTCAACAAACACTGGATTTGGAGTATTTGACAATTATGATCGTCGTTGTCGAGTTCTACCAAATGGCACAATATCCTGCGACCAACAGCTGTATAAAGATCCTTTTGCTTGGAAAAACCATAAAGAAGTTTTAGATGACATGATTCTAGAATACAGAAAATTTCTAGAGGATCTGAGGGACATCAGACGCCATTTAAAAAAGAAGAAACCAAGTGAGACGGTGGAAATAGACGGTTTCAGAATAGACAGAAATGAAAACAGAGACTGCAACTGTGATAAAAATAATGTTATAAGAAAACACAGTGTGATAAAACCAGCCAAGATAGAGAGGATGAGGAAACGGGAGAAAAGAAAAAGGAAGAAAATGAAAAAAAAAAGGTCGGGGTCAACGTGCAATGCTCAGTATGAAATGTTTCACACACAATGATGACCACTGGCGCACTCCTCCACTGTGGAAAGACGGTCCTTTCTGCTTCTGTCCGAACGCTAACAACAACACGTACTGGTGTTTGAGGACAGTAAACCAGACGCACAACTTCTTGTACTGCGAGTTCATCACCAACTTCATCAGCTACTACGACCTCAATCAGGACCCGCATCAGCTCAACAACGCTGTGCAGGATTTAAATTATGGAGTTTTACAACAACTACACGAGCACTTGGCCTACATGAAAGCTTGCAAAGGAAGTCGTGGGTGCACACTTGGTCAAGGAAATCATAGAAGTAAAAAAACTTCAGATTCAGGAAGAAAGAAAGAGTTGAGAAAACAAGAACCCCTCAAAGAACGACACTTACCAATCGAAGATGTGGAAACTTTAGGTTGAATGACGATTTAAGTCAAACAACAGTGTCATTGCTTCTGTTGTGCATTTATCAATTTGGTGCTGGATTATGTTAACTTTCAAAGCATAACAAACACAACTCTGGTTACAAACTGATGGTGCTTTTCAAATAGTCTCTTTTAAACTTCAAATCAAAGAAAAAAGATTTTAATTCCATCAGAGGAAAAAAAAAAAGAAAACTTTTACTTAACAGTTATGATGGAAAGAAGTATTATGGTGCTTTTCAAATAGTCTTAAACTTCAAATCAAAAGAAAAAAGATTTTAATCAAAGGAAAAATAAGAAAGATTTTACTTAACATTTATGATGGTGCTTTTCAAATAGTCTTTTAAACTTCAAATTCAAATCAAAAGAAAAAAAGATTTTAATCAAAGGAAAAAAGAAAAAGTTTATTTAACATTTTGATGAAAGAAATGTAACGAAGATAATGCTGGTCAAAAATTGACAGTGATTTTTACATTTTTTGTTTTCCTTTAAACCAGGCAAGAAAAACAGATTATTAATTTGCATTTTGATGTCATGAACAAAGCATTTGTCATCCATTGGAAGTGTTTTTGAAAGATTTTTATTTTGATGAAAAGGAACTACTCTTTTCTAAATTGACATATATCTTCTGTATTTTGATATTGGTTATTATGTGTAAGAAAAAAACAAAAACAGTTGGATTCGATCTCACAGAAGATGGATGTTTATAAGAATATGATTCATGTGTAATTTATGTTACTGGGTGAAATGCAGAAAGAATGTATTGTAATATTTTCCTGTACAGGCATTATGAGCCTTTTGTGTTCAGCTGATTTGTACTAACATCTTTGATTACTTAAGAAATATGTGAATCTTTGCTTTTGGTAAAAAGATGTGAAATGTTTAGTTTAGGTAAAACAGGGCATAAATATTTTTTTAGTATATACAAATAATGTGTGAAAGGTGTACATTATTTTTGTGTCTCTAAAAATCATAAAATTGCATTAATAACTTTTAAAATGTTTAAAAATGTGAGAGAAGACATACATTTTTAGTTCATTTTAAATAAAATAAAAATATACTGAGAACTTTTAATTATATAAAAAAATATGAATTTCTAGTTTTAAAAAACATTAAAAGCTGACAGTAGGAAAAAGACTTAAAACATTTCAATATTTTTGAAATAAAAATTAGATAATTTTCATATAAAAATCTAAAAAGGATATTAAAAAATATTATTTATAAATGATTTCAGTGTAGGTAAAAAAGAAAAAGACATTAATAATTGTTATTGTATGTAAAAACTTAAACCTTTTTAGTGGCCCTGAAATCCAAATAACATTAACAGACTTAAGTTTCCTTTTGTATCTGTATGAACTAATGTGTAAGATTGATGTGAATGAATGTTCATAGATATCATGATGAAAATTCTAAGCAATCAGTCAATATATTGTTTAATGATTATATTCATTAAATGAATGAATACTGAGCAGAAATATACAAAATTCGATTTTTATTTGTTTTAATTTTAAACTGATCAGATATTATTAAATTAATCGCATAAGAATTTGCTTAATGCATATTGAGGAAAGTTAACAAGAAATAATACTAATTTACAATAAGTTTTAAAAGTCACCTTTTAGTATTTATATTCTTTTTAAATGTTAATAAATATTCAAGACACTTCATCCTATCTACAATAGTCAAATATGAAAGTCAAAAGAAGTATTATTGGTATTTTTAAAACGGTCACATTTTCGAAGTAATTCTTTATTAAAATTTGGTTGTGAAATTTCTGTTTCTTATTAAGAATTTCTTACAGTGAAAACGAGCATACTGAGACAAAGTTAATGAATATTCAAAGTCTTAATGAATATTCATGTAGTTGTGTAGTAAGATGTATTTTATGAGATACTGCCCTATTGATGTGCTTGTTGCTTGATATTACAAAGTGTTCAGATTAATAGTTCAGCATCCATCCTATCTACACTGATCTCTTTGTCATATGAACTAAGTGTATTGTTGTTATTATGTATTATATTTGCTGTATATTTGTTTTGCTTTGTATAGAAAACATGTTTGTTAGATCTTCAAAATGCTGTCATGTAATTCATTTTTCAAAACGAAAAAGAAGACTTAAAATAACCCCAGGGTATTAAAAAACATGGCTAATGTTAATTACAGCAAAGTGTTTATAAATAAATAAATTGTTTTTAGTCTGAACAATACTTCTCATCATTATTCATAGTTATTCATTTATCTTTCATTCAGTATTTTATTAATTGCTGAAGATAATGTGATAAACAAATAATATTAATTAGAAATTTTGATATTCATGTTTTATATTATGATTTCAGTTACAACTTTTTTGTTCGTATTTATTTTTTTCTAATGCCATTAATTTTCATATTGTTTTCATTTAAAAGAGTTGATATTGTTTTTGTAAACTGGAATCATTATTCTCTCTCCATTATTCATTTTCAGCCATTCAGTGATTGATTCTGTTAGCTTGGTATTTGCTTTCAGTTATTATTTTTTGGCTAATACACTTTCATTAATGCACAGGTTTTCAGTTTTTAAATATTTATTAAAAAAAAAAAAAAAAAAAATGATGCGTTTTTGTTATTCATTGCATGTTGGGATTTTTGAATCATTAAAATATAGTTGGTTTTTTTAATTTTTAATTTTCTTTTTCTTTTTTATTTTTTTGCGATCTATGGGAAGGAATATATTAAAGTTATGTCCAACGCAGTGAATTTTTTTCTATCTCGTTTAAATGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12548	DUF3740	Sulfatase protein	Family	Interproscan
PF16347	SGSH_C	N-sulphoglucosamine sulphohydrolase, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR024609	Domain	Extracellular sulfatase, C-terminal	Interproscan
IPR032506	Domain	N-sulphoglucosamine sulphohydrolase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43108	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005539	Molecular Function	glycosaminoglycan binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008449	Molecular Function	N-acetylglucosamine-6-sulfatase activity	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0010575	Biological Process	positive regulation of vascular endothelial growth factor production	Interproscan
GO:0030177	Biological Process	positive regulation of Wnt signaling pathway	Interproscan
GO:0030201	Biological Process	heparan sulfate proteoglycan metabolic process	Interproscan
GO:0032836	Biological Process	glomerular basement membrane development	Interproscan
GO:0040037	Biological Process	negative regulation of fibroblast growth factor receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf107_8.21 global RNA-seq network