Gene detail

Detailed information of CsqKR_Scaf103_38.3 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_38.3	SERINE/THREONINE-PROTEIN KINASE	chr6	32820768	32852258	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf103_38.3

ATGTTCCGACAATCACCAGATGTTCACTTAGGAACTTCATCAGAAAGACTTTCACCTGAAATGCCACTTCTGCAGTCTTCAGAACAGACTTTCAGACGATCCCCAGAATTACGCCGACGTTCACCGGATCATTTATTACGCCGCTCTCCCGATCCTTTAATGCGACGTTCACCTGACCATCTGTTGCGCCGCTCTCCTGATTCTTTCCTTAGACGCTCACCTGAATTTATGTTGAGGAGGTCCCCTGATCATACATCAAGTTTGGAACGTCGGTCACCTGAACCATTGCCTCTAACATTTCGACGGTCACCAGAGCCACCTTCCCCAATTCATCATAATTCACCAGATCATTTGTGGTTTCCAGCACCAATTGAGAGGTCTCATGGATCTCAAGGATCAGATGATGCCTGCAAGTTTCGAGGAAGACCAAAGTTTAAAAGAAGCCCTCATGAGAGCCCCAGGAATCTTTCTCCAAGTCAGCATGCCAGTTTTGCCTTTCAAGCTATTAGAAAGTGTGACGGAAGGCGGTGGTCTTTTGCCTCTTTGCCATCATCGTCAGGTTATGGTACCAACACCCCAGGCAGCTCCAATTATTCTTCTCGGTATTCATCTCAAGAAAAGTTACATCAACTCCCTTCCCAGCCGACAGCAGAAGAATTACGCTTCCTGTCAAAACACTTTGGTAGCTCAGAGAACATGGCGGGAGGGGTGGGGATGGTTACATCAGTGGAAGATGATGGCAGGTGTTCACCACAAATGCGACCTAGGTCTCGTAGTCTGAGTAGTCCTGCAAGATCTCCAGGAGGAGAGTCAGAGGTGATCATCATGAACAGTGTATACAAGGAGAGGTTTCCTAAGGCGACAGCTCAGATGGAGGAGCGACTGCGTAACTTCATAGAACACAACAAGACGTTGTGTCCGGAGAAGGAGTCTGACGCTGTGTTGTGTTTCACACATCACCAGGTTCTTGAGCTGGCTCGCGACTGTCTGGAAAAGTCTGAGCAGAAACTGGTGACAACCAACTACTTCTGTGAACTGTCTGAGAGTCTAGAAAAACTTCTTATTGATGCAAGAGAAAGATCGGTGAAGGCATACAATCACTTGTACCCACTGGTCAAACAATTGTTCTTAATTGTTTCACGACCAGCTCGTCTACTGGAATGTTTGGAATTCAACCCAGAAGAATTTTATATGCTGTTAGAGGCTGCTGAGGGCCATGCTAAGCAAACCATTAAAGCTGATATTCCACAGTACATTATCAGCAAATTAGGACTGAACAGAGATCCCCTGGAAGAAATAATTGATGTAGATATTGATCCTGAGAAAATAGAAGATGAAGAACCAGAGGAAAAAGAAGTGCAACAATTAACCAAAGCAAAACCACCTGTTGAAGAGGATTTTGAAACAATTAAACTTATTAGTAATGGAGCATATGCTGCTGTGTATTTAGTACGCCACAAAGCAACTCGACAGAGATTTGCCATGAAGAAAATATGTAAACAAAACCTAATGTTGCGAAATCAGATAGAACAAGTGTTTCTGGAAAGAGACATCCTTTCTTTCACTGATAACCCCTTTGTTGTCAGCATGTACTGCAGCTTTGAAACCAAGAAACACTTATGTATGGTGATGGAGTATGTTGAAGGAGGGGACTGTGCCACATTGTTAAAAAATGTTGGACCTCTTCCTTTAGATCTTGCCAGAATGTACTTTGCTGAAACTGTTCTTGCCTTGGAGTATTTGCACAGCTATGGAATTGTGCATCGTGATTTGAAACCAGACAATTTTCTAATCACAGCCACAGGCCACATAAAACTAACAGATTTTGGATTATCCAAAATTGGATTAATGAGTTTAACCACAAATTTATACGAAGGTGCTATGGATAAAAAGTCAAAAGAATTTCAGGACAAGCATGTGTTTGGAACCCCTGAATATATTGCGCCTGAAGTTATTCTTCGTCAGGGCTATGGAAAACCCGTGGACTGGTGGTCGATGGGGATCATTTTGTATGAATTTCTTATTGGTTGTGTTCCATTCTTTGGTGATACACCAGAGGAGTTGTTTTCTCAGGTTATTAATGAGGAAATTGAATGGCCAGATGATGATGAATGGCAGGTTAAGGATGATGCTAAAGATTTGATAACTCGTCTGCTTACCCATGATCCTCTAGAGCGACTGGGGTCAGGAGGAGCTCACGAGGTCAAAGAACATGTTTTCTTTTTTGGTGTGGACTGGAACAGCATTCTGCGACAGAAAGCTGAGTTTGTGCCACAGTTGGAAAATGAGGAAGATACAAGCTATTTTGACAGTCGAACAGATCGCTACAACCATGAACTGGATGGAGATGACACGGAAGATGACACTGATGAAATTCTGTTTCACAGTTTTTCTTCTTGTTCCCCACGTTACAGTCGAGTTTACAGCAGGATACAAGAAGAATTGACAGAAACAGACGTCGCCATTCTAGCGCTGATGATTTCCGGACAAGAGTTCTGGAGAAACAAGCTCTGGAGCGTAAAGGATTCCAACCAGTCTGAAGGGTCAGAGAGTTCACTTGAACTGAGAAGTATTTTACGCAAAGACAGTCTACATTCAGAAAACGACTCACGGACAGATGCCAGCACAATCAAAATGGATGAGGATGTATTCAGCAGCTTAGATACTCCACGTTCACGTGATCTAAGTATCTCAGACTCCTCACAGACCGACAGTGACTCCTGTGGCTCTCCTCAGGTATCACGCTCAAAACCACAGCTCAAGAACATCATCCCCAGACTGGCAATTTCTTCTGAAGAGGAGCGCACTTCCAGTTCCAAAGAACTGTCCCCTGTTGATGAGGTGAGAGAGAAGACGGATGACACAGAGAAGAAAGTGACAGAGAAGTTGCCCAATATGCAGAAATCACATTCAGCCACAGCCCTCACAAGTTCACGAGATGGATCTCCAAACCGCAGTTCTAGTCTTGCTTGCAGCTTAAAACCACCAGTAGTTGTTAAGAGAGGTGCATGTGGATTTGGTTTCAGTTTTCAGTCTGTCAGAGTCTATATTGGTGATACTGATGTTTACACCATCCAGCATATCATTACTGATGTTCAGCAGAACAGTCCAGCCTTTGAGTCTGGTCTGAGACCAGGTGACTTGATCACACATATCAATGAGGAGTCTGTTCAGAGCTTGCTTCACACCCAGGTAGTACACCTAATGACTGGCAATGTGATCAGCATTAAGTGTGTTCCCATAGAGAGCACATCTATCAGGACAGGCACTCGCAGAAAGACAACAAACCCTGGTAAAATGGCTCGGCGTGCTATAAGAAAGAGACAACAGAGAGAGAAGGTAACAGAGAAAAAGAAAGGTCGGTCGCTGTTTCGTCGACTCAGCAACAAGAAAGAACATGTTCTACCATCATCACCAGCAGCTACAAGAACCTTCTGTCACTTCAGTCGATCATTTTCTTCAAGTGAAGGCACACCAGGCTCAAGCAAGTCAGGAAAATCTCCTCCTTTGGCTGGACATTGGTCCTTGGATTCGTCTCTGAACATGAGTTCTACCAGCAGCTCTCCTAACTCAAGCACACCCAACTCTCCTGCTGGTCCAGCTCACCTTGGCAGGCCAAGCTCATTACATGTAGTGAAACACAAGAAATCTCAGACTCTGAAGTCACCTCACAGGAGAAAGTCAGTACACAACATCCCTCTCTCCCCTCTAGCCAGAACTCCTTCTCCTTCTCCTCTTGCATCATCACCAGCACGCAGTCCAAGCCCTCTCGCTTGTGTACAAGGTCACCAGGCAGGAAGCTCTAACATGCCCCAGCAGACAATCCCTGCTTACCTGAACCCAACCAGTGCTGGTCAGACCCTCGCACCAACTAATGGATCAAGACAGAAGAGCTGTGATTCTGGCTCTCCGAGGATGCGAAGAGCCGTTTCACCTGACAGGCTTCATCCAAGTTCGGCTGAAAAACTCCCAGTTCAGAGAAAAGCTTCACTTCAGGAAAAGAAATCTTCAGCAGATTTGTAG

Transcript

CsqKR_Scaf103_38.3

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF08926	DUF1908	Domain of unknown function (DUF1908)	Domain	Interproscan
PF17820	PDZ_6	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR000961	Domain	AGC-kinase, C-terminal	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015022	Domain	Microtubule-associated serine/threonine-protein kinase, pre-PK domain	Interproscan
IPR023142	Homologous_superfamily	Microtubule-associated serine/threonine-protein kinase, pre-PK domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR037711	Domain	Microtubule-associated serine/threonine-protein kinase, catalytic domain	Interproscan
IPR041489	Domain	PDZ domain 6	Interproscan
IPR050236	Family	Serine/threonine-protein kinases, AGC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24356	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0018105	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_38.3 global RNA-seq network