Detailed information of CsqKR_Scaf103_25.17 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf103_25.17AAA-FAMILY ATPASEchr63149298031506546-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF02359CDC48_NCell division protein 48 (CDC48), N-terminal domainDomainInterproscan
PF02933CDC48_2Cell division protein 48 (CDC48), domain 2DomainInterproscan
PF17862AAA_lid_3AAA+ lid domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003338DomainCDC48, N-terminal subdomainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR003960Conserved_siteATPase, AAA-type, conserved siteInterproscan
IPR004201DomainCDC48, domain 2Interproscan
IPR005938FamilyAAA ATPase, CDC48 familyInterproscan
IPR009010Homologous_superfamilyAspartate decarboxylase-like domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR029067Homologous_superfamilyCDC48 domain 2-like superfamilyInterproscan
IPR041569DomainAAA ATPase, AAA+ lid domainInterproscan
IPR050168FamilyAAA ATPase domain-containing proteinInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23077AAA-FAMILY ATPASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0030970Biological Processretrograde protein transport, ER to cytosolInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan
GO:0034098Cellular ComponentVCP-NPL4-UFD1 AAA ATPase complexInterproscan
GO:0051228Biological Processmitotic spindle disassemblyInterproscan
GO:0071712Biological Processobsolete ER-associated misfolded protein catabolic processInterproscan
GO:0097352Biological Processautophagosome maturationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf103_25.17 global RNA-seq network
TOP