Gene detail

Detailed information of CsqKR_Scaf103_1.25 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_1.25	AMYLOID PROTEIN-BINDING PROTEIN 2	chr6	29081665	29090421	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf103_1.25

ATGGCAAATGGAACACGACGTGGAACCTATATTGTGAATAGGTTTCCAGAAAATGCACCAGTATTATCCAGATCTGGAATTGATCAGCAAAATCTGATGAGATTAAAAGTGAATCGAATAGCACTAATCCAGGAAATTAAAGTAGAACACTTAGTACCTCCACTAATAACTGCTGGAGTGCTGAACATGGAGGATGATCAGAAAATTCAAAAAGCAGCCAGTGCAGGAGGCAAAGCAAGGACTCTTATTGACATTCTACCAACAAAACCTGCATCTTCAGAATGGTTCAAACATTTTCGAAATGCTTTGAAGAATCCAGATGCTGACACAGAAACAAAACAACGCTATCGCATCCTTGTTGAATTTCTAGACAACACTGTCATTCATAGGCCATCTTCTCAAAGCATTCATCTCAGAAACACATGTGAGCTTGAAAACTTTAAATATCCAAAATATGACCCACTGCCAGCCATAACTGAACACAACCAACCACAGTCACAATCACAAGATACAGAGATTATTGGAAATAGTACATTTGACAAAGAGACAACCAATGGAAGTGAACCAGAAAGAGAATCTAGTGATGATCAACCAGAACTGGATTTAGAGTCTTCAGGACTGAGTTCCAACAGTCATTGCTCCATGACATTAATCAAAGGATTCATACACCAGTGGGTTTCTGTCCCTGACAGTTTCAAATCTCAGATTTCTTTGCCAGATACTCATAAGCAGCTGTTACTGAAGTCCAAGTATCCAGAGGATGACGAGCAGCTTGAAGATGAAAAAAGAGCCTTGCAGAAGATAAAGAAACTTGAATTTGTTGCTTCTTTGGTGAGGATGAAGCAGCTTCCATTGGGATTTGAGTTGTGTCTGAGTGATATTTTGCAAGACATTCTAAACAAGTCAAACCTGTACCATCTGTACCTGAAATACTTCAAGATGCTGCATAAAGTTGACATCAATTTAGTTACAGAAATAACCAAATCCTTTCAGTCTCTGGTGAACACTGTCAAAGTAGCCAAAACATCAGAGACCATGGAACAGATTGTAAATACAGGCTTTAAAATTATGAATTTCTTCATAGAAATGGAATTTTTTAATGAAGCTGAACATATCACCAATATCTTACTTGAATTCTTGAACACAAATCCCAATACTGAGACATGGATGGCTAAATTCAAATGCTGCATCAAATTGATGCATATCAGGAACAGCAACTATAACTTCAGTGGTGCAGGTGAAGCCTATTTCAGTGCTGTTCAGATGACATGGGCAATTTCTCAGATGTCGTTTGGACAGAATACGTTACATATGGGAGAGATGTACTCAGCACTCAGCCTCACATTGCTGGAAGATGGTGCCATCTCTTCAGGTTATAGCTGGATTAACAAAGCTCTTCAAGAGGTTCCAGATAATTCCTGGGCTCAGATAATAAACACACTGTGTACTGCTGTTATTGCATACACAAGCAAGTGGCAGGTGAAAAGAGCTGAGCTAGTGGCTGTTCAGTGTGTCCAGTTAGCCAGGTTACATTTTGGAAAGAGTCATCCTCTCTATCTGAAAGCTCTTCTTCATTTCTGTCACTTTTCAAGTGAGTTCTTACAGGACCAGGCTGGAGTGAAAGTTGCTTTTAAAACTCTGGAACTATCGCAGAAGCTCTATGGCTGTGAAACTCTGCAGCAGGCTCTGGCACATAGAGCTGTCAGCAAGGCTCTGATGGTCATGCACCAGTTTGATTCGAGTGAACATTATCAACATGCCATGGAGTCTGTTCGCATTGCTAGGCTACTGCTACCAGAAGACCATCCCATGTTAAACATCTTTTTTCACACTTTCTCATTATCATTACAATGGAAAGCTGCCCAGGATCCAGAAGAACTTCAGAGCAGCACTTTTCTGTGGGCAGAAGCAGAGGCAAAACATGCACTGTCCATTGTTCTAGACCATTACGGTGCAGTCAGTCTGAGGTCAGCACAGGTATACTCACTGCTTGGACAGGTGTATGCTAAAATGGCAAAATATGAACAAGCTGAAGAGAAAATAAAGAAAAGTTTTGAATACATGAAGTTGTGTCAGCCAGCAGATAGCAATTACTTGTTATTGTCCATGGCAACACTTGGAACATTCTACACACTTCTAGAAAGACCAAATGAGGCCATTCCTCTTCTAAAGCATGTTGCTGACACTGTTGAATCAAATGGTTTTTATCTCAAATGGGTCCATGTTTGCTATGACAACCTCATATCACTTCTGCAAGCAACAGACAACATCAAGGTAGCTGATTTGTATTCTGATAAACTGAGTGACTGGCTTCAGAGCAATCCAAAACATAAGGCACAAATTACTTTAGACATGCTGGACAACCAGCCAATGCATTATAAAAAGTTGATCAGTGTGTTAGACAAATGGGGCATTGCTGTTGAGAAAGTTCAACAGCAAGCTGATCAGTGTGAACAAGACCAGTAA

Transcript

CsqKR_Scaf103_1.25

GAAATGGCAATAAACATACCAGTCTGTTAATGCACTATTGTATTTGGCAGCTTTTAAAATAATGGCAAATGGAACACGACGTGGAACCTATATTGTGAATAGGTTTCCAGAAAATGCACCAGTATTATCCAGATCTGGAATTGATCAGCAAAATCTGATGAGATTAAAAGTGAATCGAATAGCACTAATCCAGGAAATTAAAGTAGAACACTTAGTACCTCCACTAATAACTGCTGGAGTGCTGAACATGGAGGATGATCAGAAAATTCAAAAAGCAGCCAGTGCAGGAGGCAAAGCAAGGACTCTTATTGACATTCTACCAACAAAACCTGCATCTTCAGAATGGTTCAAACATTTTCGAAATGCTTTGAAGAATCCAGATGCTGACACAGAAACAAAACAACGCTATCGCATCCTTGTTGAATTTCTAGACAACACTGTCATTCATAGGCCATCTTCTCAAAGCATTCATCTCAGAAACACATGTGAGCTTGAAAACTTTAAATATCCAAAATATGACCCACTGCCAGCCATAACTGAACACAACCAACCACAGTCACAATCACAAGATACAGAGATTATTGGAAATAGTACATTTGACAAAGAGACAACCAATGGAAGTGAACCAGAAAGAGAATCTAGTGATGATCAACCAGAACTGGATTTAGAGTCTTCAGGACTGAGTTCCAACAGTCATTGCTCCATGACATTAATCAAAGGATTCATACACCAGTGGGTTTCTGTCCCTGACAGTTTCAAATCTCAGATTTCTTTGCCAGATACTCATAAGCAGCTGTTACTGAAGTCCAAGTATCCAGAGGATGACGAGCAGCTTGAAGATGAAAAAAGAGCCTTGCAGAAGATAAAGAAACTTGAATTTGTTGCTTCTTTGGTGAGGATGAAGCAGCTTCCATTGGGATTTGAGTTGTGTCTGAGTGATATTTTGCAAGACATTCTAAACAAGTCAAACCTGTACCATCTGTACCTGAAATACTTCAAGATGCTGCATAAAGTTGACATCAATTTAGTTACAGAAATAACCAAATCCTTTCAGTCTCTGGTGAACACTGTCAAAGTAGCCAAAACATCAGAGACCATGGAACAGATTGTAAATACAGGCTTTAAAATTATGAATTTCTTCATAGAAATGGAATTTTTTAATGAAGCTGAACATATCACCAATATCTTACTTGAATTCTTGAACACAAATCCCAATACTGAGACATGGATGGCTAAATTCAAATGCTGCATCAAATTGATGCATATCAGGAACAGCAACTATAACTTCAGTGGTGCAGGTGAAGCCTATTTCAGTGCTGTTCAGATGACATGGGCAATTTCTCAGATGTCGTTTGGACAGAATACGTTACATATGGGAGAGATGTACTCAGCACTCAGCCTCACATTGCTGGAAGATGGTGCCATCTCTTCAGGTTATAGCTGGATTAACAAAGCTCTTCAAGAGGTTCCAGATAATTCCTGGGCTCAGATAATAAACACACTGTGTACTGCTGTTATTGCATACACAAGCAAGTGGCAGGTGAAAAGAGCTGAGCTAGTGGCTGTTCAGTGTGTCCAGTTAGCCAGGTTACATTTTGGAAAGAGTCATCCTCTCTATCTGAAAGCTCTTCTTCATTTCTGTCACTTTTCAAGTGAGTTCTTACAGGACCAGGCTGGAGTGAAAGTTGCTTTTAAAACTCTGGAACTATCGCAGAAGCTCTATGGCTGTGAAACTCTGCAGCAGGCTCTGGCACATAGAGCTGTCAGCAAGGCTCTGATGGTCATGCACCAGTTTGATTCGAGTGAACATTATCAACATGCCATGGAGTCTGTTCGCATTGCTAGGCTACTGCTACCAGAAGACCATCCCATGTTAAACATCTTTTTTCACACTTTCTCATTATCATTACAATGGAAAGCTGCCCAGGATCCAGAAGAACTTCAGAGCAGCACTTTTCTGTGGGCAGAAGCAGAGGCAAAACATGCACTGTCCATTGTTCTAGACCATTACGGTGCAGTCAGTCTGAGGTCAGCACAGGTATACTCACTGCTTGGACAGGTGTATGCTAAAATGGCAAAATATGAACAAGCTGAAGAGAAAATAAAGAAAAGTTTTGAATACATGAAGTTGTGTCAGCCAGCAGATAGCAATTACTTGTTATTGTCCATGGCAACACTTGGAACATTCTACACACTTCTAGAAAGACCAAATGAGGCCATTCCTCTTCTAAAGCATGTTGCTGACACTGTTGAATCAAATGGTTTTTATCTCAAATGGGTCCATGTTTGCTATGACAACCTCATATCACTTCTGCAAGCAACAGACAACATCAAGGTAGCTGATTTGTATTCTGATAAACTGAGTGACTGGCTTCAGAGCAATCCAAAACATAAGGCACAAATTACTTTAGACATGCTGGACAACCAGCCAATGCATTATAAAAAGTTGATCAGTGTGTTAGACAAATGGGGCATTGCTGTTGAGAAAGTTCAACAGCAAGCTGATCAGTGTGAACAAGACCAGTAACTCTAATTTTAACAGTGACATCACATGGCACAAAATAAGTGGCATGTGATGTCTAATTTAACAGCTGTCATTGTTCTATGGGTAAAATGAAGTGTAGTATCATGTTTTCTGGATAAAGCAAAATTAAATTTTATTTTATTTTAATATACAAGCACATGTATGATTCCATATTAAGGATTTATTAAAAGATATATTGAAAATGTTGATCATTAAAATATTATTTTCATCCTTCATTTATCTCACTGATGCAGTGCTGCATTGCTGTATGTTGAATTTTAGTTTTTCTCGCTCACTGAAGCTATACTGAATACAAGGATGCTTACCTCTGGGTTTGACTAATTATAAATAATTATTAAATGTTCCTCATTAATTAAAAATATTCCACATGGGATTAAAAAATAATAATAATTAAAACTAAATAAAGGAAGAAGAAAAATACTGTACTTTAAGACAAACCTTACTGTTCTACCTGAATGGTTTACTAAGAAATATTTCAACTTGCAGGTGTAGCTAGGAATTTCAAATAAACACTTTTACCTCATTACACTTTTCAGTATTGCATTTGTAATTTTAAGAAACAATAGTCATGTATTAGTTGAGCTTGTTTTTTAGTTTCCTTTTTGGAACACAATTTTATTCTTTAATTAATTTTTTTGTTTTTAATTGTTTGCTTATTGTCTGTATACTTCTTTCTTTCTTTATCTATCTGCCTTTCTGTTTAACATATTAAGATCATCATTATATTCATATTTATATAACTCTTCCATAAATATATTAGTTTTCATTAGATTTTATAATATGTTAATTCTTTACTTTATATTTACAATCTTTATCACCATCACAACTATATTAAGATCTCCATTATATTAAAATTTATATAACCCTTCCACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001315	Domain	CARD domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR042476	Family	Amyloid protein-binding protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46575	AMYLOID PROTEIN-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0031462	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_1.25 global RNA-seq network