Gene detail

Detailed information of CsqKR_Scaf103_0.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_0.10	AMINOTRANSFERASE	chr6	29072124	29078941	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf103_0.10

CTCCACGGATGTCAAAAGTAAAACAATCACAATGAACTACTCAAGATTTCTAAATCAAATTAGTCTTGGTAGAAAACCTTCACCAATTCGTGTTTTAACCGAAATAGTTTTGACATCACCAAATACTTTAATATCTATGGCAGGAGGAATGCCAAATCCAGAATTCTTTCCAGTTCAGGACATTTCACTGACTTTGAAAGATGGTTCTAAGCTTAATGTTGACACCTTCTTGGTGACCAAGGCTATGCAGTATTCATCTTCTGAAGGATTTCCAGAACTTATAAACTGGGTAAAAGAACTTCAGAAGAAAGTTCACAAACCTCCAACACTTAATATAGAAGATAAAAACAAACAGCTTCAAGTTATCATTACAAATGGCAGCCAAGATGGTCTCAGTAAAACTTTGGAAGCTTGTTTATCAGCTGGAGAAAATGTTTTGGTAGAAGTTCCTACTTATGCTGGCACTCTGTCAACTCTAAATCCTCTTGGAGTAAACGTAAACAAAGTTGAATCTGACAAGGATGGAATCATCCCAGTCAGTCTTCGTGAGCAGTTGTCAAAGTGGAAACCAGAAAATTCCAAAGATACAAACAGTAAAATCCCCAAACTTCTTTACTGCGTGCCTAATGGAGGAAATCCAACAGGCAGCCAGCTCACATTGGAAAGAAAAAAAGAAATTTACAAAATTAGTCAAGAGTATGACATCCTCATTCTGGAAGATGATCCCTATTTCTATCTTCAGTTTACTAAACCTTACATACCAAGTTTTTTATCAATGGATGAAGATGGCAGAGTGATGAGATATGATTCTTTTTCAAAAATAATTTCTTCTGGAATGCGAATTGGGTGCCTCAGTGGACCCCGAGCTTTAGTAAATAAAATTGTTTTGCATCAACAAGTATCAACTCTTCACCCCAGTGGAGTATCCCAGGCAGTACTGTTCTCAGTTCTCAATAAAATGGGTCACTCTGGCTTCCTGGAACACTGTGGAAAGGTTGCTGATTTCTACAAGGACAAACATGAAGTTTGTGTTGCTGCAGCTAACAAGCATTTAAAAGGTCTAGCTGAATGGAGTGCTCCCTCAGGTGGCATGTTCCTGTGGATGAAACTGCCACACATCACAGACACATTCAAACTAATATCCGAGAAGGCGAGAGAGAAGGAGGTTCTGTTTGTTCCTGGTAATGCTTTCATGGTTGATTCTAGTCTTCCCTGTCAGTACCTCAGATGTTCTTACTCACTTGTCTCCCCTGATGACATGGATAAAGCCTTTGAACGTCTTGCAACACTGATCAAAGAAGAACTGAAGTAAAAATAAGGAATGCCACCTCCCTTGTTATAGTATTAAACAATAATACTTTTAAATAATGATGACCAGCAATCGTGTAGCATTGTTAAGGTCATAGGGTAGTTGCCCTGGGCACAACATTCTAAGCAGCACAAAAATTCAACAAAAAACATAAAATAATAAAGAATGCCAACCCATGAGAAACTACTGTATACCAGTGTAGCATTTGAAATGTATTTAAATATTTCCTGAACTGTTTAATTATTACATTCAATATACAGATATGTATCTATTGTACCAGTCAGTTTATATCTGAAATATAAGTTACACATACACATGTAATACATGTATGTTTTTGCAGTGTTTAAAATATTACACAATTTCATTATAGCATGCATTGCTTTATTTTATAAATATTAAAGATTTAAATATATATTTTAAATATCTATCGGTAGCAAATATAAAATTTGAAAATACCCTGAGGGCTGGCCCTAATCGAAGTTTTGTTTTGAATGTAATTATTACAGTTCTGAAACACAACCAGACATTGACTTTAATTTCTTTATTCTGCTTGACTATAATGGTTTAGGTGTATTTTTTGTTTCAACATTTTTACCAAATTTTATATAATAAATTTTATGCTAATACATTATTGTTATTCAAATACTTGGGCAATTCACACATTACAATCAATTAAGACATTTTTTAAATTTTAAATTTTATTTTACACATAAACGGCAGCAGTAAGTTAGTACTGAATCTAGTATATGATTGTGCCAACAAATTTAACAAAAACAAAAACATTATTTGAAACTTTTAAGAAAATACAGAATATAAGTCTTAAATATTTTATATTCAGTAATTATACTGACTTTTAAACATTTTATATACAAATATGTTGAAATTTGTGTTAAATTATGTTGTATGATTTTGGGTTTGTTTTGAAATACAAAAAGGTTTATAACCTGAAGAGATTGTTTTTATATTCTGGGTGATCAGTGTTTATTAACAGTATGATAGAAATGTGAAAATATTTTATATATTCATGTCATAGCTTTTATAACACCGATTTGGGTGATTAAAGATATTTATTTTGCTTGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR050859	Family	Class-I PLP-Dependent Aminotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42790	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0016212	Molecular Function	kynurenine-oxoglutarate transaminase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:1901605	Biological Process	alpha-amino acid metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_0.10 global RNA-seq network