Gene detail

Detailed information of Csp23G001660.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp23G001660.1	FOLATE TRANSPORTER	Chr23	4269122	4276062	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp23G001660.1

GAATTACGTCTGTTGTTGCTGCCTCAGTCAGAGCGCACGAGGTCAACAATGCCACCAGACTCAGCTGCTGGATAGCTTGCTGTGTGAAAATGTCACAGTGACAAATGGAGCAAAGGTCAACAGTTTCTCGCACATGCCATTGGAAGCATGTAGCATTTTGACTTCATGGTCATTGTCCTGTTAAATGGTTCACTGTCACCGTTTCAGTATCTCTCTGGCATGGACAGGGAACATGAGCTGAGATGAAACCACAGTCTGACTGAAGTGTTCAAGCCAAACAGTTATTATTATTCGagttatttcattcatttctgcaACTTTCAAGTCAAAACGACTTCTCACGTGGTGATTTGACCGAGCGAAATAGTTACACTCTGCATCACGGAGTGGTCCATAAACCAGGCTGATACAATGGTGGTGGATGCCAGCGCAGGATGTGGGGACAAAtcggaggaggagaaagagattGATCTGAGGGAGTCTGCATTTGAGAACAGTGGAGGACATGAAGTTGGAGATGTAGACATGGCTGCCTCCACTTCTGAGGCCCTGTCTCCGTCCGATGGATGCCCAGAGGAAGCCGGGGAGCCCAGAAAATGGAAGTGGGCAgtgattttcttgtgttttttcgGTTTTATGGCATCAATAAAGCCTGGGGAGCCCTTCATCACACCATATCTACTCAGCCCTGTGAAGAACTTCACCAGGGAACAGGTGACCAATGAGATCACTCCTGTACTGACGTACTCTTACATGGTCGTGCTGGTGCCGACCTTCCTCCTGACGGACCTCATGCGCTACAAGCCGGTCCTGATCATCCAGGGTATCAGCCAGGTGGTCATCTGGCTCATTCTGCTCCTGGGCACCTCCCTCCTCGAGATGCAGCTCATGGAGTTATTCTATGGCATCACCATGGCTTGCCGTGTGGCCTACTCCTCCTACATTTTCTCTTTAGTCAGTCCAGTTCTCTACCAGCGCTTAGCCGGATACTCGCGCTCCTCAGTCCTCTTGGGAGTGTTCACCAGCTCGGTAGTAGGCCAGCTGTGCATGTCTGTGGGCAACGTCACCTACTACACCCTGAATGCTATATCTTTGGGGTTTGTTAGCTTTGGTCTGCTGCTTGCAATGTGCCTGCCCTGGCCTAAACGTTCCCTATTTTTCAACCGGATGCAGAATCAGGAACAGAAGCAACTGGCAGAAGTAGCCACCAAATCCGAACTGGACAGAATGAACCCGAAAGACAAGGTGTCGCCCTCTGCATCGCGCTGGAGGAGTTCTGTCTTTATGCAGATGCTGCTTGAGGTGAGAGATGTGGTGAAGAGGCCCAACCTGAGGCTGTGGTCCCTGTGGTGGGTGTTCAACTCCACAGGATACTACCTGGTGCTGTTCTACGTTCACATCCTGTGGAACAAAGTCTACCCGGCCACTGAGAACAAGCATGTTTACAACGGCGGAGTGGAGGCAGCTTCTACCCTGCTAAGTACGGTGACGTCCTTCACCGCAGGCTTTGTGAAAATTCGGTGGAACGTCTGGTCAGAGCTGGTCATCGGTGTGGTCACTGCGCTGCAGACGGGTCTGCTGCTCCTCATGATTAGCACGGACAACATTTGGGTCTGCTACGCAGCCTACATCCTATTCCGGGGCTTCTACCAGTTCCTGGTGCCTATTGCCACTTTCCAGATAGCCTCGTCTCTCACCAAGGAGCTGTGCGCCTTAGTGTTCGGCATCAACACCTTTTTGGGGACCATTCTGAAGAGCATCTTCAACCTGATATTTGCCGACAAGAGAGGCCTGGCGTTGGAAGTGCACTCTCAGTTCTTGGTCTACGTCATTTACTTCTCCATTCTGACCGTCGTCTACTTTGTCTGCGCTGCTGTTGTCATCATCCGTCACTATAGAAACCAGCCCAGTGGAGGAGGCGGGGCCAACGCGCCCGTAGAGCTGCATCCCATGGCTGCAGAAACTTTGTCTAACGGCAAAAGTGCCAAAGCATAAAGACAAGAAAAGTGTCTTTCCATCAACATCTTATCTAaatcctccttttttttcagtgttagCTGCTGAGCCTTAAATCATTGAAGTGCCTCATCGTCTACCTAAAGCTGCTGCACTACACCAGTCAGACTGCAGGGCCTTTTTTTCTGATGCTTTGACATTCATTTTTCTACAAAAGGTACCCTGCCTGTGTTTCATATTATGGCAAATTATCTTCAGCACAACGAGGGACcacttatttaacatttttgtagTATTTTATAACAAAAGGAGGATTCGCAGAATGATTTTCCCTTCAAACCAAAGTTTGATTCAGGAGAATTActaaattaatttttaaatattaCGTTAAAACAGTATACATTTTCAGGATTGACaggcaaaatgttttatttcactcATCTGCACTCCAAAAGGAATTGAGATAGCATTTTAGTtagtttcccccccccccctttttgtACTGATAATCACATTCTTATATACTAGAGATCAGATTattaaggttttttttccccaccagcCTTTAAGTTTATTTGAAGCTGCAGATTTTTAAGCCGTGTCGCCGTGAAATTTTCCAAACCGTTTTATTGTTGCTGTAGTTTTCAAAGTCAGGCCCACGTTGTTGTAGCTCTGACAGAAGGTCTGACTGAACCTTTTACCATTTTTGGTATAAGGgggaaataataattatttcaaCAAGTCACAACCGTCTTGGGTGGAGCTGCGCCCAGATGATTGACGATTGTGCTGGCATTTGCACACGGGGAGAGGACAACCCTGGCATTAAAAGGCTAAATCCCCCTCGCAAGAAAATGTAAAAGCTGCTCACTTTTTTCTGTGCCATTAGCGACCAGGCTAGGGTAACAGGGAGGACGAAATAGGGGGCCAATGACAGGCCTATACCAACAGCCTACTCGCTGTTAGTCAGACTGTTGTCGCTGTTTGTAATGTGCCAGCAGCAGTGTCAGAATATTAGAAATAATCATTCAATCAGTCAGGTTACAGAATATGTTGTTTAGGAGAAATGATATATGACAATAATGTTTGTAGTACACAAATACgtgtttgttcgtttgtttttttaaatgtgatattTCCTCTGACGGTTGACTTTCACCAGTTTATTTGGTGAAGATTCCACATGACAGGATGGGAAGCTTCAGTCAGTATTCATGCTGCTAGTTCATTGGCATTTTGGTTAACAACCAACCTCCAAAAGGGCTCCAACAACTAAAACCTGCATGTCTTCATGTGCAGTAGTAAGGGTATCTCATAGGACATAGGAACGCAGTGTTATGTCATGCAGAAGGAACTACAGTGCGTTTTTAAAGGATCTTTCTTACGAGAGAAGCAAACCATTGTAACAGATTGTCCTTAAATTCAGAATGTATAGATATTGTTTTAATGAATCGATTGATGTAATTGCTGAACTGTGAACGTGTCTGAATGCTGCAAAAAGGAAAACACTGATGTGAATGAGATGCTTATTTTTTACTCacaaataaatgacatttggtgGATAAAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01770	Folate_carrier	Reduced folate carrier	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002666	Family	Reduced folate carrier	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10686	FOLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005542	Molecular Function	folic acid binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008518	Molecular Function	folate:monoatomic anion antiporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0051180	Biological Process	vitamin transport	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0090482	Molecular Function	vitamin transmembrane transporter activity	Interproscan
GO:0098838	Biological Process	folate transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-