| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Csp15G003890.1 | NUCLEAR BODY PROTEIN SP140 | Chr15 | 12433334 | 12443233 | + |
| CDS | |||||
| Csp15G003890.1 | |||||
| Transcript |
| Csp15G003890.1 |
| Protein |
| Csp15G003890.1 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | SAND |
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00439 | Bromodomain | Bromodomain | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF01342 | SAND | SAND domain | Family | Interproscan |
| PF03172 | HSR | HSR domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000770 | Domain | SAND domain | Interproscan |
| IPR001487 | Domain | Bromodomain | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR004865 | Domain | HSR domain | Interproscan |
| IPR010919 | Homologous_superfamily | SAND-like domain superfamily | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR036427 | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR043563 | Family | Nuclear body protein Sp110/Sp140/Sp140L-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46386 | NUCLEAR BODY PROTEIN SP140 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000981 | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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