Gene detail

Detailed information of Csp08G008770.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp08G008770.1	THRAP3/BCLAF1	Chr08	24454910	24470080	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp08G008770.1

ATGCCCAGATCCACGAAATCTGCCTCGACTTCTCGGAGCCACTCCAGGTCCCGGTCAAGATCCCGCTTCACCTCTCGCTCAAGAAGTCGCTCCAGATCCCGGTCCAGGAAGCGCCGCTACGGCTCTAGGTCTCGGTCACGCTCCAGATCTTATTCTCCATCTCACAATCGGGAGAAAAAATATCCAAGGGGATACCAGAACAGTTTTGAGTTCCGGGGCTTCCACCGCGGCTTCCGGAGGCCATACAATTTCAGAGGCCGGGGCCGTGGCTACTTCCAACGCGGACGTCACCAGCGTGGTGGTGGCGGCGGCTATAACAACAACAACAACAACAACAACAACAACTTCCGCCCCAACTGGAAAAATTACAAGCAGAACCCTCAAAGGCAGCAGCAACAGAAGCAGCAAAACTATCCACGAGGACGATATCACAGCCCTCAGAAACGCTCAGGAAGTCCCTCTCGCGGTCCCTCTCACCACTCTGACCGATCTGCCTCACCCTTATCCAGACACTCGCAGCATTCTTCCGCTTCTTCACACTCCTCCTCTCCCAAATGCAAGCAAGGCTTATTGTTCAACCAAAGCCCCAAAGATGTGAAAGAGGAGCTGTTGGCCTCTAAGGAGGTCCAAAAGGAAGGAGGGGGAGATGGGGAGTTGGCAGGAGATGCCAAAGAAGGCAGAGGCAGTGAGAAAAATGAGGAGACCTGGCAGGGCCTGAAAGACTGCAGCAGCAGTCCAAGGAGAACAAGTCCTCTTGCAAGCCCCGCTGTTGTTGTTGGTCAGAACAGCCAGACTGCTAACCAGTCTAGTCCCTCCCTTAAAATCACCAATGATTTTAGCAATGACGCCTCCTGCTGGCAGACAGTGTGCAGTTCATCGGCAACAAAAACACCCTCACATGAAGGGTTGAATCCAATGCTCTCTAGCTTTGACTTCATCTCCAAAGAGGAATACCTGGATGGAGATAAAACAGCAATCTCCATTGCCTTTGGAAAGTTTTTGGAGGAGCAAAATAAAAAAGCTAAATCTTGGGAAAATGGGAAGAGCGCAGAAGCAAATGATGTGGATACGGAACAAGGGAAAGTGAATGGCAATGCATCCGTGTTTAACTCTGACTCAAGGAAGAACAAAGAAGATGTAGACGGTGAAGTATCTCTGAACAGCTTTTTGAAAGCTTCTCCTTTTCTGTCTGCTGATGGGGAGGAAGAGGAGGAGATAACGATCAAGCCTCAAACAAAGTCAGTTCATAAAAACTGGTATAATGGGGACGAGTCCTCTAAACCAAAGAGCAAGGTCACTCACTCAGCCCGGGAACTGTTTGAAGAATGGTTCGGCAAATGGCAGAATGTGACCTATTCACAGGTAGCCAACAGTGACCTTGACTCCGTGGCAGAGGAGATGCATCTCGGTCGAAAGCAGGATAAAGCGGCTGCCTTTGCCGCTGCCCTTGCCAAGAGGGAGTTAGCAGGAAATTTTGAGGAACTCTCTGCAGGCAGGAAGATGGAAAAATCTCCCTCAATCCCATGTCCTACAACAGTATCAAGGAGGAACTCTGACAGAGAGATGTTTATGATCAGGGGTGAGGACTTGCCGTCCATGTCCTCACGGAAGCAGGAAGCAAAAGTAAATGTCAGAATGGATTTCCTTGGAGAGAGCCTATTGAGCTCCTCTGATATCTTAGCTGAGGAGCGACAGTTGTCTCAGGATCTTGTGCAGTCCTCAAAGAAAGATCAGGAGTTTCGCTCCATCTTTCAACATGTTCAAAATGCTCCGTTGCAGAGGAGTCCCTCTGAGCTGTTTGCTCAACACATAGTCACCATCGTTCACCACATTAAAGCTCAGCACTTTCCATCTTGTGGAATGACTCTAAACGAGCGATTCACCATGTACCAAAGACGAGCTGCAGAGAAGGAAATGATGAAGCCAAGAAAAAGCCCAGAAATACACAGGAGAATTGATGTTTCACCCAGAGCTTTTAAGAAACACGCTCAACTTTTTGAGGCGATGAAAAGCTCAGAGGATGGCACTTACAAGGACGATGGAGAAAAAATGAAGGGTGACCCAATGGACCTTCGTTTGGATATTGAGCGTCGTAAAAAATATTCCACCCACAAAAAAGATTATAATCAGGATCGGGGAAGAGCTATGGGAGATTCCCCAGATTCTAGCAGAGAGAGATCAGATGAAAAGTTGTCCAAATGCCACAAGCGATCAAAGAAAAGTAAGAAGAAAAGATCTCGCTCAAGTTCATCGTCCTCCTCCGACGAGTCCCAAAAAGAGGATTTGCCACACGGCAAGACTGATCCCACAGATAAAGGCTTTAACAGGGTCCGACTTGGTGAAATGGAATCACCAGGATCAGCTGAAAGAGGAACGCCGCGTGGAGGATTTCAAGTGCAAATTCGTGGAAGAGGCTGGAACAGAAGCAATTATCAGGGAAACTGTTCACAAAGTAACAACGTGCCAAACATGGCAGTACACCCAAAAAATGAAGACTGGGACCCAGAGTACACTCCCAAGAGCAGAAAATACTACTTGCATGATGACAGAGAGGGGGAGACTGACTTCAAGTGGGCGGACAACCGAGGGCGTGGACGGGGAAACCTCTCACGTGGAAGGGCGCGGTTCATCATCCGGAAAGCCACTGGGGGTCCTAACACCATTAGCCCCAAATGGGCCCATGACAAGTTCCAAGTCAACGGGGAGCAATGTAATGAGCAGGAAGGGGAGACAGAACCGGACCACAAAGAGGGAGACGTTGATGGAGCGCATACTTGA

Transcript

Csp08G008770.1

GAAGGCGGAAGGAAACATGAACCTCTGAGCctcacggagcggacacacctcctcctctcctctgaacACCGCTCAGCGCGGTGGAAACacgcacgcagacacacacttgacacaaaCTGGGAACAACGGCagaaacaaaagaagagacCAGGGAGAAAGTAACTCATCTCCGCATTATCGCACTGATCACACAATCCGGCCTGAATGTGACGCGTCAAGGCTGAACTCCAACGCCGACCGTTTGAAGTGGGCTGGCTGCAGTGATGCCCAGATCCACGAAATCTGCCTCGACTTCTCGGAGCCACTCCAGGTCCCGGTCAAGATCCCGCTTCACCTCTCGCTCAAGAAGTCGCTCCAGATCCCGGTCCAGGAAGCGCCGCTACGGCTCTAGGTCTCGGTCACGCTCCAGATCTTATTCTCCATCTCACAATCGGGAGAAAAAATATCCAAGGGGATACCAGAACAGTTTTGAGTTCCGGGGCTTCCACCGCGGCTTCCGGAGGCCATACAATTTCAGAGGCCGGGGCCGTGGCTACTTCCAACGCGGACGTCACCAGCgtggtggtggcggcggctataacaacaacaacaacaacaacaacaacaacttccgCCCCAACTGGAAAAATTACAAGCAGAACCCTCAAAGGCAGCAGCAACAGAAGCAGCAAAACTATCCACGAGGACGATATCACAGCCCTCAGAAACGCTCAGGAAGTCCCTCTCGCGGTCCCTCTCACCACTCTGACCGATCTGCCTCACCCTTATCCAGACACTCGCAGCATTCTTCCGCTTCTTcacactcctcctctcccaaATGCAAGCAAGGCTTATTGTTCAACCAAAGCCCCAAAGATGTGAAAGAGGAGCTGTTGGCCTCTAAGGAGGTCCAAAAGGAAGGAGGGGGAGATGGGGAGTTGGCAGGAGATGCCAAAGAAGGCAGAGGCAGTGAGAAAAATGAGGAGACCTGGCAGGGCCTGAAAGACTGCAGCAGCAGTCCAAGGAGAACAAGTCCTCTTGCAAGCCCCGCTGTTGTTGTTGGTCAGAACAGCCAGACTGCTAACCAGTCTAGTCCCTCCCTTAAAATCACCAATGATTTTAGCAATGACGCCTCCTGCTGGCAGACAGTGTGCAGTTCATCGGCAACAAAAACACCCTCACATGAAGGGTTGAATCCAATGCTCTCTAGCTTTGACTTCATCTCCAAAGAGGAATACCTGGATGGAGATAAAACAGCAATCTCCATTGCCTTTGGAAAgtttttggaggagcaaaataaaaaagctaAATCTTGGGAAAATGGGAAGAGCGCAGAAGCAAATGATGTGGATACGGAACAAGGGAAAGTGAATGGCAATGCATCCGTGTTTAACTCTGACTCAAGGAAGAACAAAGAAGATGTAGACGGTGAAGTATCTCTGAACAGCTTTTTGAAAGCttctccttttctgtctgctgatggggaggaagaggaggagataaCGATCAAGCCTCAAACAAAGTCAGTTCATAAAAACTGGTATAATGGGGACGAGTCCTCTAAACCAAAGAGCAAGGTCACTCACTCAGCCCGGGAACTGTTTGAAGAATGGTTCGGCAAATGGCAGAATGTGACCTATTCACAGGTAGCCAACAGTGACCTTGACTCCGTGGCAGAGGAGATGCATCTCGGTCGAAAGCAGGATAAAGCGGCTGCCTTTGCCGCTGCCCTTGCCAAGAGGGAGTTAGCAGGAAATTTTGAGGAACTCTCTGCAGGCAGGAAGATGGAAAAATCTCCCTCAATCCCATGTCCTACAACAGTATCAAGGAGGAACTCTGACAGAGAGATGTTTATGATCAGGGGTGAGGACTTGCCGTCCATGTCCTCACGGAAGCAGGAAGCAAAAGTAAATGTCAGAATGGATTTCCTTGGAGAGAGCCTATTGAGCTCCTCTGATATCTTAGCTGAGGAGCGACAGTTGTCTCAGGATCTTGTGCAGTCCTCAAAGAAAGATCAGGAGTTTCGCTCCATCTTTCAACATGTTCAAAATGCTCCGTTGCAGAGGAGTCCCTCTGAGCTGTTTGCTCAACACATAGTCACCATCGTTCACCACATTAAAGCTCAGCACTTTCCATCTTGTGGAATGACTCTAAACGAGCGATTCACCATGTACCAAAGACGAGCTGCAGAGAAGGAAATGATGAAGCCAAGAAAAAGCCCAGAAATACACAGGAGAATTGATGTTTCACCCAGAGCTTTTAAGAAACACGCTCAACTTTTTGAGGCGATGAAAAGCTCAGAGGATGGCACTTACAAGGACGATGGAGAAAAAATGAAGGGTGACCCAATGGACCTTCGTTTGGATATTGAGCGTCGTAAAAAATATTCCACCCACAAAAAAGATTATAATCAGGATCGGGGAAGAGCTATGGGAGATTCCCCAGATTCTAGCAGAGAGAGATCAGATGAAAAGTTGTCCAAATGCCACAAGCGATCAAAGAAAAGTAAGAAGAAAAGATCTCGCTCAAGTTCATCGTCCTCCTCCGACGAGTCCCAAAAAGAGGATTTGCCACACGGCAAGACTGATCCCACAGATAAAGGCTTTAACAGGGTCCGACTTGGTGAAATGGAATCACCAGGATCAGCTGAAAGAGGAACGCCGCGTGGAGGATTTCAAGTGCAAATTCGTGGAAGAGGCTGGAACAGAAGCAATTATCAGGGAAACTGTTCACAAAGTAACAACGTGCCAAACATGGCAGTACACCCAAAAAATGAAGACTGGGACCCAGAGTACACTCCCAAGAGCAGAAAATACTACTTGcatgatgacagagagggggagactgACTTCAAGTGGGCGGACAACCGAGGGCGTGGACGGGGAAACCTCTCACGTGGAAGGGCGCGGTTCATCATCCGGAAAGCCACTGGGGGTCCTAACACCATTAGCCCCAAATGGGCCCATGACAAGTTCCAAGTCAACGGGGAGCAATGTAATGAGCAGGAAGGGGAGACAGAACCGGACCACAAAGAGGGAGACGTTGATGGAGCGCATACTTGAGCAGTGAAGCAATGTTCTGAAAATCTTAATTTTCTTCTGTGTCATTATGGGATCTGACTCAGCGATTTTATCCATCACAATCGATTAATGAATGCAGATTGAAATGTTTTACGAGTCAGCTATCTCTAGGAAAACTTTTTATGCTTTAATGTCTGCATAGGATAATCACTCTGACTTGACATGACCATTTCCCACATGAGAATAGAACTATATAACTAGTAGAAGAACTGTTTCAATGTGAACTGCTGTTTCTCAATAGGAATTTGTGTACTGTTTGTTGCTTTATATGGTAAAGTGAGAATTTCCATACTATTATTCACCAacggtttaaaaaaaaaaacctccttaGCGACATTTGTATTTTCAAGTAGAAAGAAAGAATTGCATTGAAGATTAAATCAGCTTGTGCCTTATACTGCAGAAATGGTTTGTGAGTGCGAAACACAATACTTGTTCTGATGCGTTGAAATTTACTCCAATTACCCAACtatgagttttaaaaaaaacaaaaaaaaaaaacagggttgTTCTTTTTAGCTGTGTCTCATATGGATTAAAATGACAGCAATAAATACACTGTACATGCCAAACATGGCATCCATGAATGACCCTGATCTGACAATGGGACCAAAGTGTATGGGGTCACAGGTTACACTCTGCAGTCTCTCATTATACAACATTCAACAGATCATCAATACCAGCTGGCAGCATAGGAGACTGTGGGATGACTACCTGTACATTTAATGTTGCTTGCAAAACATTTTGCTGTCAGATATTTCTATACTTTACAGTAGCTCTTTGATCTTGGATAGTAATCCTTGTACAATATTGATATTGATGGTATGCTTTCAAAGacactcattgtcatttttgtcGCTGGCTAGGCAGGATTTTGACTTTGTCTGTGAAGGACAATCTGTTCTTTTTTGCCATAGATagtgatgtgtttttcatttgCTGTTTGCAATCTTTTATCCAGCCACTGATGATTTAATAAATTATGTAAACTGTGTGCAGCTGGGTCAATGTTGTGATAAAAGGGGCTCACAATTAGCTTTTGTTTAGTCTATAGTTTGTAAGAAACAGAAATGCAGAATTACTTATTTCCGTAAGTCAAGGATTTGGCTCATGTCTTTTTGGCAAACTGCCCATTCAAGAGTTTTTGCCTTGCTGTGGGTGCACTGGTCTTATTTGTACAATACAGGCCTACAGATTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09405	Btz	CASC3/Barentsz eIF4AIII binding	Domain	Interproscan
PF15440	THRAP3_BCLAF1	THRAP3/BCLAF1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018545	Domain	Btz domain	Interproscan
IPR029199	Family	THRAP3/BCLAF1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15268	THRAP3/BCLAF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0035145	Cellular Component	exon-exon junction complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-