| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Csp04G007040.1 | SYNEMIN | Chr04 | 17999209 | 18006400 | + |
| CDS | |||||
| Csp04G007040.1 | |||||
| Transcript |
| Csp04G007040.1 |
| Protein |
| Csp04G007040.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00038 | Filament | Intermediate filament protein | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR030634 | Family | Synemin | Interproscan |
| IPR039008 | Domain | Intermediate filament, rod domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47136 | SYNEMIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005200 | Molecular Function | structural constituent of cytoskeleton | Interproscan |
| GO:0005882 | Cellular Component | intermediate filament | Interproscan |
| GO:0008307 | Molecular Function | structural constituent of muscle | Interproscan |
| GO:0017166 | Molecular Function | vinculin binding | Interproscan |
| GO:0019215 | Molecular Function | intermediate filament binding | Interproscan |
| GO:0031443 | Biological Process | fast-twitch skeletal muscle fiber contraction | Interproscan |
| GO:0042383 | Cellular Component | sarcolemma | Interproscan |
| GO:0043034 | Cellular Component | costamere | Interproscan |
| GO:0045104 | Biological Process | intermediate filament cytoskeleton organization | Interproscan |
| GO:0060053 | Cellular Component | neurofilament cytoskeleton | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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