Gene detail

Detailed information of Csp03G011290.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp03G011290.1	EXTRACELLULAR MATRIX PROTEIN 2-RELATED	Chr03	29470508	29488874	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp03G011290.1

ATGAAAGGGATGAGGTGGTGGCTGGTGGTGGCCAGTCTGTGGTTTCTCGTGGCCCTGACAGTCCCAGATGCACAGGCCAGGAACAGACCTCGCAACCAGGACGGTGGGACCCACCGGGGGAAGAGAAAGAGGGACGGACATGGCCATGGGCGAGACAGAGCGGGGCGCCCTAAACCTCTGAAGATCAGACTGGTTCCTGGTCCCAGCATCCCAGTGGAGCCTGAAGAAAACCAAGGACAGACTCTGTTCTTGGAGTCCTATAGGAACCTGCAAGAGGAGCACTCCAGCTACAATGTAATCCCAGGTAAGCAAGGCCAGTGTGTTTACCAGGGCCTGACCATGTTCGACCAGGCCGTCTGGTCTCCAAAGCCCTGTGTGACTTGTCTGTGTACCGGAGGGCGGGTGGTTTGTGACGAGATAACCTGTCCCATCCTGCACTGCCATTTTCCCTTCACCCCTGCTGGGGAGTGCTGCCCAGTCTGCATGGAGTCAGTTCCCAATGAGCCTGACAAGCCTGTGACCCCACTGACCCAAGAGGAAATCCAGCGAATCTTCTGGCGGGAGGAAGAGGAGCATCGCGAGGAGGAGGAGCGCCTGAGGAAGAAGGATGAAGCGAGGAAAAAGAGGAGGAAGCAGAGGAAGGAGCAGGCAGAGCGACAAAGGAAAATAGTGGAGGAGAGGAGGAGGGAAGAGGAGGAGGCATTGAGACTGCAGATGGAGAGAGAAGATGAAGAGTGGAGGAAGCAGATGGAGGAGATAGAGAGGAGGAAACAGGAGGAGGAAGACAGAAGGCAGAAGGAAGTAGCAGAGAGAGAAGCAAGGGAGAATGAAAGGAAGCTAGAACAGGAAAGGACGAGGCAGGAGGAGATGTTGAGGCAAGAATTACTGGCTTTGGTAGAGGAGGAGCAGCTGGAGGAAGAGGAAGAAGAGTGGCTGAGAGGAGATGTGTTTCAGATGCCACCAAAAGAACCTGAGGAACCAGAGGAGCCAGACCTCCCTGCGCCAATCCCAAGACCTCCCGCTGCAAAGGAGTATGAGCTGAGGGAGATAGAAGCAGAGGAAGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGAGGGAGGTAGTGGTAGTGAATAGAAGAGGCCTCCCTCCAGGCTGCGACATCTCTGATGTAACTGTGACATGTGAGAACGCCAAACTAATCTACTTTCCTCCTCTGGCCATACTGGAGCTCAAATCTCTCAGTCTGGAGGACAATAACATCAGCAGCATACCAGCTGAAGCCTTCAATGGCATCCCCAATCTGGAATGGATCAACCTGAAGAAAAACAAACTCACCTCAGCTGGGATTGATGTTAAAGCCTTCAAAGGTCTGAAGATGCTAAGGCGTCTTTACTTGGACGGGAACCTTCTAGAGGCTGTACCCACTGACCTTCCCCCGACTCTGCAGGAGCTGAAGATCAGTGAGAATAGACTGCAAGTAATCCATCAAAACAGCTTCAAAGGTCTGAGCAGCCTGGTGATTTTGGAGTTGGAGGGAAATCTGCTGAGTGAGGGGAATGTAGATCCTCTGGCCTTCGCACCCCTTATCCAGCTCTCCTATCTCCGACTGGGCAGAAACTATTTCCGAACTGTACCACAGGGCCTTCCCATTTCATTGCTGGAGCTGTACTTGGAGAGCAACGTAATTGAGGAAATCTCAGAGACAGTTTTCAATCAGACTCAAAGTTTGAACGTGGTTTCTCTGAGACACAACAGGCTGGATGAGACTCGGATCGCCCCAATGGCCTGGATCAACCACAGAAATCTGGAGTCCATCGACCTTTCGTATAACCATCTTTACCTGGTTCCATCGTACCTACCAAGGTCTCTGGTCCACCTAGTGCTTGTTGGAAACCGCATAGAGAGGATACCTGGTTATGTTTTTGCCCACATGGACCCTGGTTTAGAGTACCTCTATCTTTCCTACAACAAACTGGATGGAGAGGGAACTGAACCAGAGTCGTTTTTTGGCTCTTACAACTCCATGGTAGAACTATGTCTGGATCACAACCAGCTGATCACTGTGCCATCTGGCATCAACGAGATGACCAGCTTACACTTCCTCAGACTCAACAATAACAAGATCAGGAGTATCCCTGACGAAAGCATCTGTGACCCAAACCACAGCGGAGACGCCAATCTTGTGACCCTGAGGCTAGAAAACAACTATATGGACCCGCAGAAGATCTCACCAGCAGCCTTTTCCTGTGTTCGCTCCTCCTCCAGTGTGATCTTAAAACCTCAGAAAACCAAGTGA

Transcript

Csp03G011290.1

ATGAAAGGGATGAGGTGGTGGCTGGTGGTGGCCAGTCTGTGGTTTCTCGTGGCCCTGACAGTCCCAGATGCACAGGCCAGGAACAGACCTCGCAACCAGGACGGTGGGACCCACCGggggaagagaaagagggaCGGACATGGCCATGGGCGAGACAGAGCGGGGCGCCCTAAACCTCTGAAGATCAGACTGGTTCCTGGTCCCAGCATCCCAGTGGAGCCTGAAGAAAACCAAGGACAGACTCTGTTCTTGGAGTCCTATAGGAACCTGCAAGAGGAGCACTCCAGCTACAATGTAATCCCAGGTAAGCAAGGCCAGTGTGTTTACCAGGGCCTGACCATGTTCGACCAGGCCGTCTGGTCTCCAAAGCCCTGTGTGACTTGTCTGTGTACCGGAGGGCGGGTGGTTTGTGACGAGATAACCTGTCCCATCCTGCACTGCCATTTTCCCTTCACCCCTGCTGGGGAGTGCTGCCCAGTCTGCATGGAGTCAGTTCCCAATGAGCCTGACAAGCCTGTGACCCCACTGACCCAAGAGGAAATCCAGCGAATCTTCTggcgggaggaagaggagcatcGCGAGGAGGAGGAGCGCCTGAGGAAGAAGGATGAAGcgaggaaaaagaggaggaagcaGAGGAAGGAGCAGGCAGAGCGACAAAGGAAAatagtggaggagaggaggagggaagaggaggaggcatTGAGActgcagatggagagagaagatgaagagtGGAGGAAGCAGATGGAGGAGATagagaggaggaaacaggaggaggaagacagaagGCAGAAGGAAGTAGCAGAGAGAGAAGCAAGGGAGAATGAAAGGAAGCTAGAACAGGAAAGGACGAGGCAGGAGGAGATGTTGAGGCAAGAATTACTGGCTTTGGTAGAGGAGGAgcagctggaggaagaggaagaagagtggCTGAGAGGAGATGTGTTTCAGATGCCACCAAAAGAACCTGAGGAACCAGAGGAGCCAGACCTCCCTGCGCCAATCCCAAGACCTCCCGCTGCAAAGGAGTATGAGCTGAGGGAGATAGAAgcagaggaaggggaggaggaggaggaggaggaagaggaggagagggaggtagTGGTAGTGAATAGAAGAGGCCTCCCTCCAGGCTGCGACATCTCTGATGTAACTGTGACATGTGAGAACGCCAAACTAATCTACTTTCCTCCTCTGGCCATACTGGAGCTCAAATCTCTCAGTCTGGAGGACAATAACATCAGCAGCATACCAGCTGAAGCCTTCAATGGCATCCCCAATCTGGAATGGATCaacctgaagaaaaacaaactcacCTCAGCTGGGATTGATGTTAAAGCCTTCAAAggTCTGAAGATGCTAAGGCGTCTTTACTTGGACGGGAACCTTCTAGAGGCTGTACCCACTGACCTTCCCCCGACTCTGCAGGAGCTGAAGATCAGTGAGAATAGACTGCAAGTAATCCATCAAAACAGCTTCAAAGGTCTGAGCAGCCTGGTGATTTTGGAGTTGGAGGGAAATCTGCTGAGTGAGGGGAATGTAGATCCTCTGGCCTTCGCACCCCTTATCCAGCTCTCCTATCTCCGACTGGGCAGAAACTATTTCCGAACTGTACCACAGGGCCTTCCCATTTCATTGCTGGAGCTGTACTTGGAGAGCAACGTAATTGAGGAAATCTCAGAGACAGTTTTCAATCAGACTCAAAGTTTGAACGTGGTTTCTCTGAGACACAACAGGCTGGATGAGACTCGGATCGCCCCAATGGCCTGGATCAACCACAGAAATCTGGAGTCCATCGACCTTTCGTATAACCATCTTTACCTGGTTCCATCGTACCTACCAAGGTCTCTGGTCCACCTAGTGCTTGTTGGAAACCGCATAGAGAGGATACCTGgttatgtttttgcccaCATGGACCCTGGTTTAGAGTACCTCTATCTTTCCTACAACAAACTGGATGGAGAGGGAACTGAACCAGAGTCGTTTTTTGGCTCTTACAACTCCATGGTAGAACTATGTCTGGATCACAACCAGCTGATCACTGTGCCATCTGGCATCAACGAGATGACCAGCTTACACTTCCTCAGACTCAACAATAACAAGATCAGGAGTATCCCTGACGAAAGCATCTGTGACCCAAACCACAGCGGAGACGCCAATCTTGTGACCCTGAGGCTAGAAAACAACTATATGGACCCGCAGAAGATCTCACCAGCAGCCTTTTCCTGTGTTCGCTCCTCCTCCAGTGTGATCTTAAAACCTCAGAAAACCAAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00093	VWC	von Willebrand factor type C domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001007	Domain	VWFC domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR043184	Family	Extracellular matrix protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46544	EXTRACELLULAR MATRIX PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0010811	Biological Process	positive regulation of cell-substrate adhesion	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0070052	Molecular Function	collagen V binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-