Gene detail

Detailed information of Csp03G000510.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp03G000510.1	BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED	Chr03	2712675	2726913	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp03G000510.1

AGAACAGAACACATCAGCTGTTCCAGAACCATCAGGACCAACAGAACCAACAGGATCTGATCCAGATCTGAGGTCCTCCTTCCTCATTCTGCTGATCTgttgacattttcttcttctatgttTCAGgctgacattttcttcttctgtgtttcagGCGGGTTTTTCAGGCTCACGATGACTTCCTGTCTTTCGTCCCTTCTGTTCCTCTTCTCTTCGGTATCATCCATCATGGCCGCCACCGAACCTGCCGGCTGCAAAATACGCATCACTGATAGAGGACTGGAGATGTTGAAGTCAGAGACTCTGAAGTTTGTTGAAGAGGAGCTCAGTAACATCACTATGCCAGAAATGAAGGGCAAAGAAGGACGCTTCCAATACACCATCACTGATGTGAAGATAACAGAGCTGAATCTGACTCACGCCAACCTGCAGTTCCACCCTGAAGTGGGTTTGTTGTTCGACGTTCAGAATTCATCGATCACACTCAGCTTCCACCGACGGATCCTCTACTGGTTCTTCTATGACACAGGGAACATCAACGCGTCAGCTGACGGAGTAAACATCAACACGGTTCTGAACCTGATCAGAGACGATGAAGGACGGCTGAAGATCAATAACATCACGTGTGACGCCAGTATCTCCAAAATGAGGGCCAAGTTCAGCGGAACTCTGGGGAGAGTTTACGACTTTCTGGCCAGCTTTCTGACGACAGGCATGCGCTTCCTCCTCAACAAACAGATCTGTCCCGCTCTGAATAATGCTGCTCTGGTTCACGTGAACTCGATGCTGGAGACGATTCCTGTGAGGACGGAGGTCGATCAGTACATTGGGATTGATTATTCTCTGCTTGATAATCCTGTGGTGATGTCCAGGGCTCTCGACATGAACTTCAGGGGGATGTTTTTCGACCTGTCACATCAGAATGAGACACTGGTGAACTCCGCCATCGACCCAGTCATCAGAGAGTACGACAGGATGGTTTATCTCGCTCTCTCCGAGTTTTTCTTCGACAGCGGATTGTTGGCTTACTACAGAGCAGGAATCTTCGAGATGCACATCGTCAATGAGAAGTCTCCCAGCAACCCTGAAACcaccaaaccaaacaaccaaacaggTGATCCTGTCTCACCTTCATCGTCTCCTCCTGTCGTCTTTCTTCAGATGCCCAAAGACCTGGAAATGTTGCTGAGAACCACTTACTCTGTAGCCATCATGATACTGAACCCGGCTCTGATGGATGCTCCGATCTGTCTGGACCTTGCCGTCAACTCGCCTCCTAAAACCTCCATCAAGACGTCAGGGGCGACCGTTGTCATGACAGCCATTGTCAAGGTGATGCTGCTGCCTCCAGGTCGGCCTCCGGTCCAGCTAAGCAGCATGACCATGGAAACAAAGTTCAATGCTAAAGTTTCCATGAAGGGCAAACGTCTGGCTGTTCATGCTGACCTCCGCAGGTTTAAAATCTACTCCAACCGATCAGCGCTGGAATCTCTGGCAttgATTCCTCTACAGGCTCCTCTGAAGACGATGCTCCAGATGTCTGTGGTTCCTTTAATCAACAACTGGACGAAGAGAGGAGTTCAGATTCCTCTGGCTGATGGGATGGATTTCATTGAGGAGGTGGTCGAGTATCATAATGGCTTCATCGTGATCGGAGCCAATCTTCACTTCAGCAAAGGCCTGAGAGAAATGGTGGCAGGGACCGAGACGGACACGAACACTGTCTAAAATATACATACAATCACACACAACACTACCTAAATATGACTTTGTATAGACACATTTGTATATAACTGCATGAATCTATATATATGACACAGTCTAAAGTATATAGAATATACACTATGTCTCAATTCAGGGGCCTCATCTCTACGAAGTCTCAACAGAGACTTTTTGTTTGTCATGGAGCACCAGTCCTGTTGCCAAGCAACAATGgcaccttttacacagcctgtacaaggcgggactgttgcgCCTCACCATTTTGTATAAACGCTACAAAGGCGTAATTGgaggtttatatatatatataacggtggtagtaacagcaccaaaGGGCTACCTTCTTTCTCTTGCAGCACGAAGCGCTGGTCTTGTCACCTATGAACATTTGCAGCGGGAGTTGATTAGTAGCCATAGTTACAGTCGTAGTAAAAGCTGTGTTgtggtagtagtagttgtagtaaagGTTGTTGTAATTAAAACTGTTGTAGTAGAGgatgtagtagtaatagtaacagaaatggagacagaaaagtttactttgtaaaaaaaaattgagatgCTTCACCTTCACTTGTCGGCTGGTGATGGGGGTCCATGAGGTCGGTGCACAGACATCACTGGTGTGTTGGGATTAGATGGATGGTGGATCCTTCATGGCCCCAGAAAAGAAGGACGCATTTGTGGCCTTGTTGCCCTGCTGTGCAGCCTTGAAAGGATGCGGCCCCTTAATTCAGATACAGCTTATATTTTTGTACACGAAAGGATTTTAAAATGTACCACTAACTTTCCGGTCCAATTagccttttctctattttaaaattggttgttcATCTATATGTTGGGCaggtttgtcataattctgaggTTTGGTCACATTGAAAACAGCTTTTATCAAACTAATCCCTtcttaaactaacccacccctgTAAAAAGGCATGAAGATGGGAGACAAATAGAACTGTAAGAACACGACGGGGGCAACGTGACGGGGATCGTGTtgttggcatgctggaggcggggcagtccaccagacaagtcTGAGGAGGTCAATGTTCACTATTCCACAGTCTTGTTTCTACACCAGCCTTATTTAACCAGAGGAACATCAGACCACGCCCACCCTGGTAGACCACATGACCCAAAATCAGGACTGACATTTACCGAGATCCTGATAACAGATGTTGGGATGAAATCctgcaggatgacatcatctggaggttgtaccagtccatgaggaggaggattactgctggaacCAATGCTGAAGGGGGACACTGGTTAGTGCTGGTGTGAAATGTTGGGTCACCTGATGAATCTACGGTGCTAATGTTTTAGTTACTGATTATGATGataattaaaagttaataaaacaaaatacagattgttattttaatacaaccaaagaaaataaacacagtggtgctttTTTAAATCCCATTGAGACATTTCTGTATGCAAGATGTAACGATGCTGTGTGAATATATACTGTTTATTCTTTGCAGTATTATATATTTGGTGTTTCATATAACACAGCTTTTCAAAGTGGGGATCCTGACCCCCTGGGGGGCCGCCAGTGGGCACCAGGGGGGCCTCAGCAAAATGGATTTAAgaggagtgaaaaaaaaatgaaaaaaagaattagAAATAACATGAATTTTATAGTCTTTTAGAAATATTTAATCTCTTAGAAAAATTGAAGATTTTGAATagaattttaattatttaattaataaaagttattaacaTTTTCTGCAGGATAAGATCAATAAAACGTTTTTATATGAAACATCATACTATATAGAAATAGAGTGACCTGTTATATACATATTAATATACTCGTGTATATGAGACACATCTCTATGTAGTGTTATATATGCagttgtatatactgtatagtgTCACTGAAATCATAACTAACACTGTAAGCAGACCGAGGGGTGTGGCCTATTCAGGTGAGTCCAATAGAAACTGAAGGTGCATTCAGGTCCTCAGGTATAAATCCAATTTCTTCCATTTACCTGGACAAAGTTTAGTTTAATCCCAGTGTTAAACTGGGACTAATACAATAACCAGTGAGTTTATAGTTTATATACAGTTCAGCTTGTACTGTAGTGTGTTTGCAGTAAAGTTACCACACAGGTGTGTACTAATAGACAGATTACTACATTTACATCACATGGACTGTAGTTTTATCCTTAAAGTTGTGATTAAATCTCTTTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01273	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain	Family	Interproscan
PF02886	LBP_BPI_CETP_C	LBP / BPI / CETP family, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001124	Domain	Lipid-binding serum glycoprotein, C-terminal	Interproscan
IPR017942	Domain	Lipid-binding serum glycoprotein, N-terminal	Interproscan
IPR017943	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan
IPR017954	Conserved_site	Lipid-binding serum glycoprotein, conserved site	Interproscan
IPR030675	Family	Lipid binding protein BPI/LBP	Interproscan
IPR032942	Family	BPI/LBP/Plunc family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10504	BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0008429	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0008525	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0019992	Molecular Function	diacylglycerol binding	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0034375	Biological Process	high-density lipoprotein particle remodeling	Interproscan
GO:0035627	Biological Process	ceramide transport	Interproscan
GO:0070300	Molecular Function	phosphatidic acid binding	Interproscan
GO:0097001	Molecular Function	ceramide binding	Interproscan
GO:0120017	Molecular Function	ceramide transfer activity	Interproscan
GO:1901611	Molecular Function	phosphatidylglycerol binding	Interproscan
GO:1904121	Molecular Function	phosphatidylethanolamine transfer activity	Interproscan
GO:1990050	Molecular Function	phosphatidic acid transfer activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-