Gene detail

Detailed information of Csp02G008590.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp02G008590.1	ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO	Chr02	29785127	29906783	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp02G008590.1

ATGAGAGCGAGGCAGTGTAAACACAACTCCAGGAACATGAAAAGATCGGGTGACAGTGAGGGGGAGAAGAGAAGAAAGAGGCGGAGGCTATTGCATGAATTGGGAGACCAGAAGATACCCTTTTTGGGACCTTCAGATCAGGGCTTTCAGCAACTGTGGGATTCCAGTTACTCTGGTCTGGTTTTGAGGAGATCCTGCTCGCTGCCTGCTGAGCTTCATGGCCGGGTGCAAGCAGCTCTGCTCACTCTGAGAAGGAAGGGCTGCCTCCTGAGGGATTTGGTTCGCGTTCGTGACCGAGATGTATTCACCGCCGTGTCACGGGCTCTGCTCGGTGAGCCGGGCCACACCTATCGctatctggacacacggctctTTGCCATTCCCTGGCACAGTGAGAACACAGAAGCCAAGGGACAAAACTGTTGTGACCCTGACTTGAGGGCTGCCTGCAATGCATTGTGGGAGCTGAACACCTTCTTCTGCTCTGATGTGTCTCAGCTAAAGGAAGGAGACAGGTTGACACAATGTGCAAAGGGGGAGGCAGAGCCCAAACTGGGTGAAGAGGGGGATACGGAGTCGAAACACAGTGAAGACTCCAAGAATAGTGAAGGGGGGGACTCAGAGTCTcgacaaagtgaggagggggacacAGAATCCAAGCACAGTGAGGAGTGGGACATTGAGTCAAAACACAGTGAAGAAGGCTTCTCTGGGTTAAAACAAGAGGGAGAGTGGGAGACAGGGTCAAGACACAGCAGTGAGGAGGGAGAGTCCTCTAAGGCCAAACCAATTGAAATGGGGGCAGAACACAGTGAAGGAAAAACTCCCAACTGGGCACCTAAGACCAGTACAGAGACTAAACCTGTGGGACTAGGGACCCAAGAGAAACCCATCGCCCAACTCAAGCACAGCTTGTCAGATTACCACATTGAGGACAAAGAGGAACAGGAAAGCAGACAGGGCTGTTTCCAACCGAGTCCTCCACAAATATGCACCAGTCCATTCAAGTTCAATGTCACCTTACTCAACTATATGGACCCAGCAGCCATGAGTCAGCTCAAAGAAGAGCCTTACTATGGCATGGGGAAAATGGCAGTAGGGTGGCACCATGATGAGAACCTCATCACTCATTCACCGGTGGCTGTTTACAGCTATAGTTGTCACAAGGACCAAGGTGAGAGCAGTGAGGGAGGTAGCGGTGAGAAGGCATGCTGGAGAATCGGGCTCAAGGTAGCCTGGGACATCCACACACCTGGCTTGATGCTGCCGCTGGAGTCTGGAGACTGCTATTACATGAGAGAGGACCTGAACAGCACCCACCAGCACTGTGTTCTAGCTGGAGACAATGCACGTTTCAGCTCCACACACAGAGTGGCCGAGTGTTCTAGTGGGACCCTGACCTACATCCAGTCGCGGTGTCAAGAGGCCTTATCCAACCTGCACACTGACCCAGAGACAGGCTCCCACAGCCTGCTCGCCCTCCTGCCGACGACACTACAGCACTGTGAGGATATTCACAATGAGgtggaGTTTGAGTGGCTGCGACAGTACTGGTTTCAGGGCCAGCGCTATGCCCGCTTCTGCAGCTGGTGGACCAGACCGatggagcagctggagaaggACTGGAGGCTCTTGGAGACTATGACCATGCTCTTCCTGGCtacagtggaggaggagggacaagcaagagagggaaggagagagatggCCGAAACCCTGCTTTCTGCCTTGACTGACAGACAACAGCAAAGACAGACATGGAGAGACAGGTGCCACTCAAGTCTGGCCCAGACATTACCTCCTGAGGAGGCCCCAGTGGACAGACCCTTCTGGGGTGTGGATGACCGCAGCATGCCACTGCCCTTTGATCTGGCTGACATCATCAACAGAGTGGAGTCACTGCTCTGGAGgatGTGAAGGATGTTTAAAGGAAGTGAtaaagaaagacaagaaaaaaacacaccagcTTTTCTGAATGTGTGGGCCCCACATCAGCTGAGGGGACAGACCACTGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12933	FTO_NTD	FTO catalytic domain	Domain	Interproscan
PF12934	FTO_CTD	FTO C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024366	Domain	Alpha-ketoglutarate-dependent dioxygenase FTO, C-terminal	Interproscan
IPR024367	Domain	Alpha-ketoglutarate-dependent dioxygenase FTO, catalytic domain	Interproscan
IPR032868	Family	Alpha-ketoglutarate-dependent dioxygenase FTO	Interproscan
IPR037151	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR038413	Homologous_superfamily	FTO, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31291	ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006307	Biological Process	DNA alkylation repair	Interproscan
GO:0008198	Molecular Function	ferrous iron binding	Interproscan
GO:0035515	Molecular Function	oxidative RNA demethylase activity	Interproscan
GO:0035516	Molecular Function	broad specificity oxidative DNA demethylase activity	Interproscan
GO:0035552	Biological Process	obsolete oxidative single-stranded DNA demethylation	Interproscan
GO:0035553	Biological Process	obsolete oxidative single-stranded RNA demethylation	Interproscan
GO:0040014	Biological Process	regulation of multicellular organism growth	Interproscan
GO:0042245	Biological Process	RNA repair	Interproscan
GO:0043734	Molecular Function	obsolete DNA-N1-methyladenine dioxygenase activity	Interproscan
GO:1990931	Molecular Function	mRNA N6-methyladenosine dioxygenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-